Many thanks Bob. I knew I had to be missing something simple somewhere
Steve
________________________________
From: Robert Hanson [mailto:hans...@stolaf.edu]
Sent: 11 November 2010 11:30
To: jmol-users@lists.sourceforge.net
Subject: Re: [Jmol-users] colouring isosurface of specific residues?
Steve,
What you would do is set a property of the atom to a given number, and
then color the isosurface using the user custom scheme
{*:A}.property_color = 1
{*:B}.property_color = 2
set usercolorscheme red yellow
isosurface sasurface map property_color colorScheme "user"
Bob
On Wed, Nov 10, 2010 at 5:47 AM, Steven Platt <steven.pl...@hpa.org.uk>
wrote:
Hi,
I'm using the Application (12.0.19) to generate a few figures and cannot
seem to see, in the online scripting documentation, how to assign colour
to the isosurface of specific residues. I have a few groups defined and
can colour/represent the protein chains exactly as I need them, but the
isosurface seems to be all or nothing.
Can anyone point me in the right direction?
Thanks
Steve
Dr Steven Platt
Bioinformatician
Applied Laboratory- and Bio Informatics
Health Protection Agency
Centre for Infections
61 Colindale Avenue
London
NW9 5EQ
www.hpa.org.uk/bioinformatics <http://www.hpa.org.uk/bioinformatics>
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