> Is there some way I can delete every other alpha carbon? Or filter to 
> get only the alternate ones, or every third or fourth? 

Would it be a solution to pick them by residue number? I think it should be 
possible to check 
that in JmolScript / JmolMath and whether it divdes by 2 or 3 without remainder.
But of course you would need to iterate over every chain.


> I could come up with a way to connect them using "connect"

I'm not sure a connect would give an easy solution. If t's just for display, I 
would try draw 
instead. I think we have polylines now in draw.
But any user manipulation from popup menu will destroy that. Or maybe not, 
since drawn 
objects are not available from menu.



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