I suspect that David Goodsell can answer this one. I think he's mastered
that art. I would point people to VMD.
http://www.ks.uiuc.edu/Research/vmd/minitutorials/glsloutline/
On Thu, Jan 6, 2011 at 3:53 PM, Eric Martz <[email protected]>wrote:
> This is from the PDB list:
>
> >Date: Thu, 6 Jan 2011 11:33:21 -0800
> >From: Kevin Karplus <[email protected]>
> >To: [email protected]
> >Cc: [email protected], [email protected]
> >Subject: Re: pdb-l: Old style protein figures
> >
> >
> >Lucas Bleicher asked
> >
> > > Is there a software out there that can render line art protein
> > > figures from PDB files as those found in old textbooks (such as, for
> > > example, Cantor & Schimmel's Biophysical chemistry)? If not, what
> > > would you recommend that would look nice in monochromatic printing?
> >
> >There are many tools that produce ball-and-stick diagrams, but I don't
> >know of any off the top of my head that do so without shading and
> >label each atom with the N, C, O, S, H, P, ..., which seems to be what
> >Lucas is looking for.
> >
> >Perhaps someone on the molecular viusalization list
> >[email protected]
> >will be able to give a more useful answer.
> >
> >------------------------------------------------------------
> >Kevin Karplus [email protected]
> >http://www.soe.ucsc.edu/~karplus<http://www.soe.ucsc.edu/%7Ekarplus>
> >Professor of Biomolecular Engineering, University of California, Santa
> Cruz
> >Graduate Director, Biomolecular Engineering and Bioinformatics
> >(Senior member, IEEE) (Board of Directors, ISCB)
> >Editorial Board, Bioinformatics (Oxford University Press)
> >life member (LAB, Adventure Cycling, American Youth Hostels)
> >Effective Cycling Instructor #218-ck (lapsed)
> >Affiliations for identification only.
> >
> >TO UNSUBSCRIBE OR CHANGE YOUR SUBSCRIPTION OPTIONS, please see
> >https://lists.sdsc.edu/mailman/listinfo.cgi/pdb-l .
>
>
>
> ------------------------------------------------------------------------------
> Learn how Oracle Real Application Clusters (RAC) One Node allows customers
> to consolidate database storage, standardize their database environment,
> and,
> should the need arise, upgrade to a full multi-node Oracle RAC database
> without downtime or disruption
> http://p.sf.net/sfu/oracle-sfdevnl
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Learn how Oracle Real Application Clusters (RAC) One Node allows customers
to consolidate database storage, standardize their database environment, and,
should the need arise, upgrade to a full multi-node Oracle RAC database
without downtime or disruption
http://p.sf.net/sfu/oracle-sfdevnl
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
