Part of the problem there may be that, as far as I understand, Jmol algorithm for "protein" is more complex than identifying amino acid residues by name (that's what "amino" does). I think I read about the algorithm inside the source of JmolConstants.java
I do not mean to defend that "every atom must be a member of one of those three groups" should not be true. But it's tricky. ------------------------------------------------------------------------------ The ultimate all-in-one performance toolkit: Intel(R) Parallel Studio XE: Pinpoint memory and threading errors before they happen. Find and fix more than 250 security defects in the development cycle. Locate bottlenecks in serial and parallel code that limit performance. http://p.sf.net/sfu/intel-dev2devfeb _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
