Eric.  Can you provide an example link to look at?  I have the latest OS, Java, 
and Firefox.

Jonathan: What OS, Java, and Firefox versions are you using.  I see some of 
what you are seeing, but not sure.


On Mar 27, 2011, at 6:22 PM, Eric Martz wrote:

> Firefox 4.0 has some improvements, but also some serious problems vis 
> a vis Jmol on Macs.
> 
> -------------------------------------------------------------------------------
> Here are my observations with Firefox 4.0 on Mac OS 10.5.8 "Leopard" (no 
> snow),
> with Apple java 1.5.0_28. I DO NOT HAVE A SNOW LEOPARD (OS 10.6) 
> SYSTEM and would
> appreciate hearing about the issues below from a Snow Leopard user.
> -------------------------------------------------------------------------------
> 
> TEXT ZOOM
> View, Zoom no longer causes Jmol to be wrong-sized. This old problem 
> is fixed. I prefer to check "Zoom Text Only" because I like larger 
> than default text, but I don't need Jmol to be larger than life.
> 
> APPLET FOCUS BORDER
> Good: a new dotted line appears around Jmol when it has focus. (This 
> does not appear in Safari.)
> 
> CURSOR FAILS TO CHANGE IN APPLET
> The cursor no longer changes in the applet: placing the cursor at the 
> right margin of Jmol (for zooming) fails to change it, as does 
> holding the Shift key down for zooming. The cursor changes still work 
> in Safari.
> 
> APPLET MENU PROBLEM
> Serious problem with Jmol's menu: when you move the mouse outside the 
> boundaries of Jmol, the menu closes. This precludes using most of the 
> menu when it is raised by clicking on the "Jmol" frank.
> 
> RIGHT CLICK: MENU OFTEN FAILS IN JMOL 11.8
> I have intermittant problems raising Jmol's menu with right click in 
> Jmol 11.8 (still used in FirstGlance and in Proteopedia). Right click 
> never works from the upper left corner of Jmol. This means that it is 
> rather challenging to open the Console or see "About Jmol"! But right 
> click works reliably in Jmol 12.1.41, even in the upper left corner.
> 
> RAISING APPLET TITLE BAR
> Under the right conditions, pressing the Cmd key raises a title bar 
> above Jmol. (Thanks to Jaim Prilusky for discovering this.) The only 
> feature I have found this title bar to have is that you can drag Jmol 
> with it, detaching Jmol from the Firefox 4.0 window. This leaves the 
> original Jmol rectangle blank. If you close the detached Jmol window, 
> the molecule reappears in the original rectangle within the Firefox window.
> 
> Even when detached, all scripts sent to Jmol from the Firefox window 
> via javascript still work!
> 
> In order to raise the title bar at the top of the applet, I must 
> first click outside, then inside Jmol, then press Cmd. This works 
> only once. For a second go, you again must click outside, then inside 
> again. Further, as soon as you move the mouse, the bar disappears. 
> So, to use the title bar, I must pay attention to have my mouse very 
> close to the top of Jmol when I press Cmd. Then I can move the mouse 
> into the title bar, click and drag Jmol.
> 
> The title bar seems to be a feature of Firefox 4's interaction with 
> java. I could not find any documentation for this online. In Safari, 
> there is no title bar, and no applet focus border. There appears to 
> be no title bar in Windows in Firefox 4 (see below).
> 
> JMOL OUTSIDE BROWSER WINDOW
> Moving Jmol outside the browser window (with the title bar) means you 
> can scroll the text without pushing Jmol out of view.
> 
> Another use is that you can have two FirstGlance in Jmol sessions, 
> detach the Jmol from one, and move it for a side by side comparison 
> with the other Jmol. Both sessions retain control of their Jmols.
> 
> MENU WORKS BETTER WITH DETACHED JMOL
> Detaching Jmol has a big advantage for using the Menu: now you can 
> move the mouse outside of Jmol and the menu remains usable. This 
> works regardless of whether the detached Jmol is inside the Firefox 
> window, or outside it.
> 
> BLANKING BETWEEN SCENES IS ALMOST GONE!
> If Firefox 3.6.15 (and all earlier versions), changing the scene in 
> FirstGlance caused Jmol to go blank white before the new scene 
> appears. This was very annoying. Also, double clicking to measure 
> distances often failed, and often temporarily froze Jmol. 
> (FirstGlance is using Jmol 11.8.22; Proteopedia, 11.8.24.) In 
> Proteopedia, the 'toggle spin' and 'toggle quality' buttons cause 
> blank white flashes. Also, when you scroll the page (and Jmol moves 
> with the page), Jmol blanks white until you stop scrolling.
> 
> None of these problems happened in Safari.
> 
> In Firefox 4.0, almost all the blank flashes are gone! Except that I 
> do get a white flash (in Jmol 11.8) or a black flash (in Jmol 
> 12.1.41) when changing focus from Jmol to outside Jmol and vice 
> versa. This is pretty minor. Also measuring distances now works 
> reliably in FirstGlance!
> 
> ------------
> WINDOWS XP
> ------------
> In Windows XP (with current java 1.6.0_24), in Firefox 4.0, right 
> click raises Jmol's menu reliably from anywhere in Jmol even in Jmol 
> 11.8, and moving outside Jmol does NOT close the menu prematurely. I 
> could not find any key (Ctrl, Alt, Shift, Windows) or any pair of 
> keys that raises the applet title bar seen in Firefox (but not seen 
> in Safari) on the Mac OS 10.5.8. This was true both in virtual WinXP 
> in Parallels on the Mac, and in a real WinXP computer.
> 
> -Eric
> 
> 
> ------------------------------------------------------------------------------
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J. Philip Bays
Professor of Chemistry
Department of Chemistry and Physics
Saint Mary's College
Notre Dame, IN 46556
[email protected]





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growing manageability and security demands of your customers. Businesses
are taking advantage of Intel(R) vPro (TM) technology - will your software 
be a part of the solution? Download the Intel(R) Manageability Checker 
today! http://p.sf.net/sfu/intel-dev2devmar
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