Daniel, First note that Jmol has DSSP included now -- an authorized and verified implementation of "real" DSSP -- you should have no need to do this separately. I have no idea what you mean by "DSSP might crash" -- that's very odd. Why would DSSP crash? Anyway, if you just use
calculate structure That gives you DSSP structure. These structure types include "helix310" "helixAlpha" "helixPi", "sheet", and "turn". The DSSP output also indicates isolated "bridge" residues, but although the hydrogen bonds are indicated using calculate hbonds structure we don't right now have a specific selection option for that. We also do not indicate "bend". But that really wasn't your question: On Fri, Apr 1, 2011 at 10:49 AM, Daniel Carbajo <daniel.carb...@gmail.com>wrote: > > It works properly until I load the homology models. They are all in blue > (the first color of the user color scheme). It seems like Jmol has taken the > temperature range using the native structure temperature values. Since I > have loaded the native structure with the temperature values unchanged, the > range of these values do not go from 1 to 8, they go from 0 to around 100. > Then I load the homology models and they are all in blue since their highest > value is 8 and falls in the first category if we count from 0 to around > 100.... > > you need to set rangeSelected before you use color temperature That indicates that you want to set the color range based just on the selected residues. Bob -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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