Well, you probably can't load PDB files from the RCSB using the unsigned
applet. So that's where I would wonder. Please use Jmol.js.
On Thu, Apr 28, 2011 at 8:00 AM, Laurent Gil <[email protected]> wrote:
> Hi,
>
> I installed Jmol in a web server and it works very well when I use local
> PDB files.
> But when I try to use URL, the message "File reader was not found:Pdb"
> in the applet.
>
> I see this message if I use the JavaScript library or the "<object>"
> method, on both windows 7 and linux ubuntu machines (with the version
> 1.6.0_24).
> I assume that my problem concerns Jmol configuration, but I can't figure
> how to solve it.
> Does it concern the signed/non signed applet ?
>
> See below an example of my code:
> <object name="jmol" id="jmolApplet0" type="application/x-java-applet"
> width="400" height="400">
> <param name="syncId" value="047557821510744">
> <param name="progressbar" value="true">
> <param name="progresscolor" value="blue">
> <param name="boxbgcolor" value="black">
> <param name="boxfgcolor" value="white">
> <param name="boxmessage" value="Downloading JmolApplet ...">
> <param name="loadStructCallback" value="myStructCallback">
> <param name="messageCallback" value="myMessageCallback">
> <param name="pickCallback" value="myPickCallback">
> <param name="archive" value="JmolAppletSigned0.jar">
> <param name="mayscript" value="true">
> <param name="codebase" value="./jmol/">
> <param name="code" value="JmolApplet">
> <param name="java_arguments" value="-Xmx512m">
> <param name="script" value="load
> 'http://www.rcsb.org/pdb/files/2EB2.pdb'; set background white; select
> all;wireframe off; spacefill off; strand on; select 360; wireframe
> 0.5;cpk off">
> </object>
>
> --
> Laurent
>
>
>
> ------------------------------------------------------------------------------
> WhatsUp Gold - Download Free Network Management Software
> The most intuitive, comprehensive, and cost-effective network
> management toolset available today. Delivers lowest initial
> acquisition cost and overall TCO of any competing solution.
> http://p.sf.net/sfu/whatsupgold-sd
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
WhatsUp Gold - Download Free Network Management Software
The most intuitive, comprehensive, and cost-effective network
management toolset available today. Delivers lowest initial
acquisition cost and overall TCO of any competing solution.
http://p.sf.net/sfu/whatsupgold-sd
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
