Hello Yingjie 

I think that whether the applet is printe dor not will depend on the 
browser implementation of Java applets; little you can do about it. 
But I'm not suprprised to know that it does not print.

The alternative is to generate an image and insert it in the page 
(you could even replace the applet with the image so that the printed 
page looks the same).

>  I can get something better than a screenshot by printing the
> webpage and save as PDF.

I would expect that a screenshot is the best you can get in any case. 
After all, the applet writes to the screen and the screen is a low 
resolution device. 
You could work on this:
1- expand the applet to a bigger size
2- get an image from Jmol
3- insert the image back into the page, either to the large size or 
resized to the small size.

But if you want a good resolution, I think that printing the page is 
not going to be the solution. You should save an image file from Jmol 
at large size.




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