I think I have the same kind of problem on one of my projects where the applet 
and first model load perfectly
but loading of subsequent models triggers an error :

FileManager.getAtomSetCollectionFromFile(../../mol/gz/dimere_hemoglobine_drepanocytaire_desoxygenee.pdb.gz)
FileManager opening 
http://librairiedemolecules.education.fr/mol/gz/dimere_hemoglobine_drepanocytaire_desoxygenee.pdb.gz
file ERROR: 
http://librairiedemolecules.education.fr/mol/gz/dimere_hemoglobine_drepanocytaire_desoxygenee.pdb.gz
java.security.AccessControlException: access denied (java.net.SocketPermission 
195.83.89.11:80 connect,resolve)
openFile(../../mol/gz/dimere_hemoglobine_drepanocytaire_desoxygenee.pdb.gz): 
1530 ms
FileManager opening 
http://librairiedemolecules.education.fr/mol/gz/dimere_hemoglobine_drepanocytaire_desoxygenee.pdb.gz
 0:0 1:0 2:0 3:0 4:0 5:0 6:0 7:0 8:0 9:0 10:0 11:0 12:0 13:0 14:0 15:0 16:0 
17:0 18:0 19:0 20:0 21:0 22:0 23:0 24:0 25:0 26:0 27:0 28:0 29:0 30:0 31:0 32:0 
33:0 34:0 35:0 36:0 37:0 38:0 39:0 40:0 41:0 42:0 43:0 44:0 45:0 46:0 47:0 48:0 
49:0 50:0 51:0 52:0 53:0 54:0 55:0 56:0 57:0 58:0 59:0 60:0 61:0 62:0 63:0 64:0 
65:0 66:0 67:0 68:0 69:0 70:0 71:0 72:0 73:0 74:0 75:0 76:0 77:0 78:0 79:0 80:0 
81:0 82:0 83:0 84:0 85:0 86:0 87:0 88:0 89:0 90:0 91:0 92:0 93:0 94:0 95:0 96:0 
97:0 98:0 99:0 100:0 101:0 102:0 103:0 104:0 105:0 106:0 107:0 108:0 109:0 
110:0 111:0 112:0 113:0 114:0 115:0 116:0 117:0 118:0 119:0 120:0 121:0 122:0 
123:0 124:0 125:0 126:0 127:0 128:0 129:0 130:0 131:0 132:0 133:0 134:0 135:0 
136:0 137:0 138:0 139:0 140:0 141:0 142:0 143:0 144:0 145:0 146:0 147:0 148:0 
149:0 150:0 151:0 152:0 153:0 154:0 155:0 156:0 157:0 158:0 159:0 160:0 161:0 
162:0 163:0 164:0 165:0 166:0 167:0 168:0 169:0 170:0 171:0 172:0 173:0 174:0 
175:0 176:0 177:0 178:0 179:0 180:0 181:0 182:0 183:0 184:0 185:0 186:0 187:0 
188:0 189:0 190:0 191:0 192:0 193:0 194:0 195:0 196:0 197:0 198:0 199:0 200:0 
201:0 202:0 203:0 204:0 205:0 206:0 207:0 208:0 209:0 210:0 211:0 212:0 213:0 
214:0 215:0 216:0 217:0 218:0 219:0
eval ERROR: java.security.AccessControlException: access denied 
(java.net.SocketPermission 195.83.89.11:80 connect,resolve)
----
         load >> 
"../../mol/gz/dimere_hemoglobine_drepanocytaire_desoxygenee.pdb.gz" <<

This happens with java 1.6.0_26 on my mac. I made tests with a previous java 
version on another mac and this error doesn't happen.
It happens both when I connect to my server at 
librairiedemolecules.education.fr and when I connect to my localhost server.
It would be great to know which server setting has to be made in order to avoid 
that problem....
-Paul

Le 15 sept. 2011 à 19:58, Robert Hanson a écrit :

> OK, so the reverse lookup problem is the issue, and beyond that, Java is 
> fine. Got it. 
> 
> 2011/9/15 Angel Herráez <[email protected]>
> > I'm lost.... closer examination (in what sense?) .... breaks (how?)
> > .... this error (what error?) ..... not surprisingly (why?)
> 
> Frieda was seeing the error with Java 1.6.0_26, I saw that _27 gives
> the same. The error is that any further script file loaded separate
> from loading the applet generates a security error and is not
> executed (the system apparently perceives that the script file comes
> from a different server; this is what others traced as "reverse
> lookup").
> 
> The pages at BJ are now working fine without the error, both in _26
> and _27. So they fixed the issue in their server.
> 
> We are having a similar (same?) problem at www.uv.es, solved by
> changing to the signed applet (as we would not dare to try and
> explain the problem to the IT personnel at uv.es)
> 

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