This is strange, now I'm trying in the console "select 2:A.CA and 1.1;
catom={selected}; print catom.label" and it works... I get:
1 átomos seleccionados
NAT - manual N_A_2 CAV:2
But still this does not work...
var label = jmolEvaluate('select 2:A.CA and 1.1; catom={selected}; print
catom.label');
2011/9/21 Daniel Carbajo <[email protected]>
> Hi Angel thanks for the fast response, I label the C-alpha atom of the
> residue selected with my function colorLabel, that you can access at:
> http://bl210.caspur.it/MODEL-DB/TEST/Jmol-12new/myJMOLfunctions.spt
> And actually the line I write in php
> "colorLabel('NAT','CAV','manual','2:A','ONE')" appears as a message (but not
> the output of that line, which is what I want)...
> So I try the following in the console with an error:
> select 2:A.CA and 1.1 ----> 1 átomos seleccionados
> catom={selected}
> show catom ----> catom = ({9})
> show catom.label ---->
> ERROR en guión: el número de argumentos no es correcto
> ----
> show catom . >> label <<
>
> show catom[0].label --->
> ERROR en guión: el número de argumentos no es correcto
> ----
> show catom [ >> 1 << ] . label
>
>
> I do this after the label is present in the applet, which looks like "NAT -
> manual N_A_2 CAV:2"
>
> What is wrong there? ".label" should work, right? I use it in my function
> colorLabel, line 85, for example...
> Thanks again for your time Angel, Paul and everyone else,
> Daniel
>
>
> El 21 de septiembre de 2011 11:29, Angel Herráez
> <[email protected]>escribió:
>
> Hello Daniel
>>
>>
>> > Hello again everyone, I have already succeeded with all this
>>
>> Glad to know. You just need to persevere :)
>>
>>
>> > when I select a
>> > residue, a label appears on its C-alpha
>>
>> A label appears.... You mean you make it appear beciause you have
>> scripted that label, right? So add another action to that function.
>>
>> > and I want the same label to
>> > appear in the textbox. I highlight selected residues and write the
>> > labels via a function called colorLabel I execute like this from in
>> > php:
>> > '<script>jmolCheckbox("colorLabel(\'NAT\',\''.$prefix.'\',\'manual\',\
>> > ''.$select_nat.'\',\'ONE\')",
>> > "DELcolorLabel(\'NAT\',\''.$select_nat.'\',\'ONE\')",
>> > "native");</script></td>';
>>
>> I don't see there how you add the label.
>>
>> > var i = x[2].indexOf("colorLabel");
>>
>> But I would not expect "colorLabel" to be a part of Jmol script, so
>> it is not in the message reported.
>>
>> > if (i!=-1){
>> > var label = jmolEvaluate('select 2:A.CA and 1.1; var at={selected};
>> > at.label');
>>
>> Two ideas here:
>> 1. you are not getting the label. Maybe use "show at.label" or "print
>> at.label"
>> 2. it is likely that at is an atom set, so an array, not a single
>> atom (even if it's formed by just one atom). So, at.label is not
>> defined. Maybe "at[0].label". Anyway, you can first test that script
>> in the console and it will be easier to see the errors.
>> Say, you select manually or by a command at the console, then try
>> your command
>>
>> select 2:A.CA and 1.1;
>> var at={selected};
>> print at.label;
>> print at[0].label;
>> #whatever
>>
>> Hey!... "at" is a reserved word in JmolScript (meaning adenosine or
>> thymidine). Use another name just to be safe. Maybe that's all and
>> you don't need my other advice
>>
>>
>>
>>
>>
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>
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