There might be a bug in the FULLPLANE business. It really should look like
a full plane.
ISOSURFACE my_iso PLANE {0 0 15} {0 1 15} {1 1 15} molecular MAP FULLPLANE
property_correl
doesn't look right to me. You have a plane, a molecular surface, and then a
mapping function. I don't know what that would do.
It seems to me this should work fine:
ISOSURFACE my_iso PLANE {0 0 15} {0 1 15} {1 1 15} map property_correl
Checking... OK, yes, there was a bug there, both in 12.2 and 12.3. Fixed
for 12.3.30 and 12.2.31.
see http://chemapps.stolaf.edu/jmol/Jmol-12.zip
Bob
On Fri, Jun 8, 2012 at 7:12 PM, Oliver Stueker <
revilo2...@users.sourceforge.net> wrote:
> Hi Jmol-Community,
>
> it seems I am again kind of stuck. :-/
>
> I have some correlation data for a protein (1 value per residue) that
> I want to map on different isosurfaces.
>
> I have succeeded in mapping the data on Molecular (or VDW, SAS)
> surfaces, but now I am interested how things look like inside the
> protein by mapping these values onto cross-sections through the
> protein.
>
> But:
> ISOSURFACE my_iso PLANE {0 0 15} {0 1 15} {1 1 15} molecular MAP
> FULLPLANE property_correl
>
> gives me only a partial surface (see attached figure), although I
> would expect FULLPLANE would result in a bigger, square or rectangle
> plane.
>
> As a test case I have attached a Jmol-script that demonstrates this
> and the data-file needed.
>
> What I would like to see is something like:
> http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm?topic=6
> or
> http://chemapps.stolaf.edu/jmol/docs/examples-11/isosurface.htm?topic=28
> ( http://chemapps.stolaf.edu/jmol/docs/examples-11/img/molslice.jpg )
>
> I hope someone can enlighten me. :-)
>
> Best,
> Oliver
>
>
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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