I don't see the crashing. What's the error report?
x = getProperty("atomInfo")
gets that into a model.
$ load $caffeine
print getProperty("atomInfo")[3]
$
_ipt : 2
atomIndex : 2
atomno : 3
bondCount : 3
clickabilityFlags : 12
colix : -32762
color : [x909090]
coord : {1.7906001 0.2081 0.0010}
element : carbon
elemno : 6
formalCharge : 0
info : C3 #3
model : 1
partialCharge : 0.0
radius : 0.80833334
shape : trigonal planar
spacefill : 0.391
sym : C
visibilityFlags : 13
visible : true
x : 1.7906001
y : 0.2081
z : 0.0010
$ print getProperty("atomInfo")[3]["atomno"]
3
It's more efficient, if you only want one value, to put it all in the
quotes:
$ print getProperty("atomInfo[3][color]")
[x909090]
and if you skip the [3], you get a list over all the atoms (in this case)
$ print getProperty("atomInfo[color]")
[x3050f8]
[x909090]
[x909090]
[xff0d0d]
...
Bob
On Thu, Jul 26, 2012 at 7:05 AM, Martin Hediger <[email protected]> wrote:
> Dear Jmol Users
> If I load a PDB structure into the Jmol application (not the Jmol
> applet) and use
>
> getProperty "atomInfo", "1.1"
>
> I receive the output
>
> atomInfo *List[0]
>
> in bold blue font. However, when I just use
>
> getProperty "atomInfo"
>
> the application crashes.
>
> I have two questions:
> 1) In the Jmol application, how can I assign the *List[0] content to a
> variable and access its elements? Whats the Jmol syntax for this?
> 2) What do the '*' and the [0] mean in this context?
>
> Thanks for help.
> Martin
>
>
> ------------------------------------------------------------------------------
> Live Security Virtual Conference
> Exclusive live event will cover all the ways today's security and
> threat landscape has changed and how IT managers can respond. Discussions
> will include endpoint security, mobile security and the latest in malware
> threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Live Security Virtual Conference
Exclusive live event will cover all the ways today's security and
threat landscape has changed and how IT managers can respond. Discussions
will include endpoint security, mobile security and the latest in malware
threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/
_______________________________________________
Jmol-users mailing list
[email protected]
https://lists.sourceforge.net/lists/listinfo/jmol-users
