You can use show residue instead : it will display selected residues in the
console.Paul
Le 19/10/12, Jenheta <[email protected]> a écrit :
>
>
>
>
>
> Dear Jmol users,
>
>
> Thanks to Jmol power, we have a script that select a few hundred molecules
> from an specific region nearby a surface. In order to further identify them,
> labels are been added to this selected group. Is it possible to save/print
> these labels to console or a file ?
>
>
> Thanks again or your kind attention.
>
>
> Best,
>
>
> Jen
>
>
> On 19/10/2012, at 02:22, Robert Hanson <[email protected]> wrote:
>
>
>
>
> > {*}.ribbons = (average width of ribbons)
> >
> > This will be 0 only if there are no ribbons.
> >
> >
> > On Thu, Oct 18, 2012 at 3:31 PM, Dina Schneidman <
> > <[email protected]>[email protected]> wrote:
> >
> >
> > > Thanks! this is what I need.
> > >
> > >
> > >
> > > On Wed, Oct 17, 2012 at 4:40 PM, Robert Hanson <
> > > <[email protected]>[email protected]> wrote:
> > >
> > > > That's curious. Files with just CA atoms still produce ribbons. Please
> > > > send
> > >
> > > > an example file that does not.
> > >
> > > It is not a real backbone, just a collection of spheres, given as CA
> > >
> > > atoms, so it is not supposed to produce any ribbons.
> > >
> > >
> > >
> > > > You might append after that:
> > >
> > > >
> > >
> > > > if (!{*}.ribbons) { select protein or nucleic;spacefill only }
> > >
> > > what is returned by {*}.ribbons?
> > >
> > >
> > >
> > >
> > >
> > > >
> > >
> > > > On Wed, Oct 17, 2012 at 4:59 PM, Dina Schneidman <
> > > > <[email protected]>[email protected]> wrote:
> > >
> > > >>
> > >
> > > >> already tried this, it doesn't work for a file with CA atoms only,
> > >
> > > >> because no ribbons can be defined, but it is still considered a
> > >
> > > >> protein.
> > >
> > > >>
> > >
> > > >> On Wed, Oct 17, 2012 at 3:08 PM, Angel Herráez <
> > > >> <[email protected]>[email protected]>
> > >
> > > >> wrote:
> > >
> > > >> > Hello Dina
> > >
> > > >> >
> > >
> > > >> > You can try this:
> > >
> > > >> >
> > >
> > > >> > select protein,nucleic; ribbons only;
> > >
> > > >> > select !(protein,nucleic); spacefill only;
> > >
> > > >> > select all;
> > >
> > > >> >
> > >
> > > >> > And by the way, Jmol applet does not run in the server, but in the
> > >
> > > >> > client
> > >
> > > >> > browser!
> > >
> > > >> true
> > >
> > > >> >
> > >
> > > >> > On 17 Oct 2012 at 14:41, Dina Schneidman wrote:
> > >
> > > >> >
> > >
> > > >> >
> > >
> > > >>
> > >
> > > >>
> > >
> > > >> ------------------------------------------------------------------------------
> > >
> > > >> Everyone hates slow websites. So do we.
> > >
> > > >> Make your web apps faster with AppDynamics
> > >
> > > >> Download AppDynamics Lite for free today:
> > >
> > > >> (http://p.sf.net/sfu/appdyn_sfd2d_oct)http://p.sf.net/sfu/appdyn_sfd2d_oct
> > >
> > > >> _______________________________________________
> > >
> > > >> Jmol-users mailing list
> > >
> > > >> <[email protected]>[email protected]
> > >
> > > >> (https://lists.sourceforge.net/lists/listinfo/jmol-users)https://lists.sourceforge.net/lists/listinfo/jmol-users
> > >
> > > >
> > >
> > > >
> > >
> > > >
> > >
> > > >
> > >
> > > > --
> > >
> > > > Robert M. Hanson
> > >
> > > > Larson-Anderson Professor of Chemistry
> > >
> > > > Chair, Chemistry Department
> > >
> > > > St. Olaf College
> > >
> > > > Northfield, MN
> > >
> > > > (http://www.stolaf.edu/people/hansonr)http://www.stolaf.edu/people/hansonr
> > >
> > > >
> > >
> > > >
> > >
> > > > If nature does not answer first what we want,
> > >
> > > > it is better to take what answer we get.
> > >
> > > >
> > >
> > > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> > >
> > > >
> > >
> > > >
> > >
> > > >
> > >
> > > > ------------------------------------------------------------------------------
> > >
> > > > Everyone hates slow websites. So do we.
> > >
> > > > Make your web apps faster with AppDynamics
> > >
> > > > Download AppDynamics Lite for free today:
> > >
> > > > (http://p.sf.net/sfu/appdyn_sfd2d_oct)http://p.sf.net/sfu/appdyn_sfd2d_oct
> > >
> > > > _______________________________________________
> > >
> > > > Jmol-users mailing list
> > >
> > > > <[email protected]>[email protected]
> > >
> > > > (https://lists.sourceforge.net/lists/listinfo/jmol-users)https://lists.sourceforge.net/lists/listinfo/jmol-users
> > >
> > > >
> > >
> > >
> > >
> > > ------------------------------------------------------------------------------
> > >
> > > Everyone hates slow websites. So do we.
> > >
> > > Make your web apps faster with AppDynamics
> > >
> > > Download AppDynamics Lite for free today:
> > >
> > > (http://p.sf.net/sfu/appdyn_sfd2d_oct)http://p.sf.net/sfu/appdyn_sfd2d_oct
> > >
> > > _______________________________________________
> > >
> > > Jmol-users mailing list
> > > <[email protected]>[email protected]
> > >
> > > (https://lists.sourceforge.net/lists/listinfo/jmol-users)https://lists.sourceforge.net/lists/listinfo/jmol-users
> > >
> > >
> > >
> >
> >
> >
> >
> > --
> > Robert M. Hanson
> > Larson-Anderson Professor of Chemistry
> > Chair, Chemistry Department
> > St. Olaf College
> > Northfield, MN
> > (http://www.stolaf.edu/people/hansonr)http://www.stolaf.edu/people/hansonr
> >
> >
> >
> > If nature does not answer first what we want,
> > it is better to take what answer we get.
> >
> > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
> >
> >
> >
> >
>
> > ------------------------------------------------------------------------------
> > Everyone hates slow websites. So do we.
> > Make your web apps faster with AppDynamics
> > Download AppDynamics Lite for free today:
> > http://p.sf.net/sfu/appdyn_sfd2d_oct
> >
>
> > _______________________________________________
> > Jmol-users mailing list
> > [email protected]
> > https://lists.sourceforge.net/lists/listinfo/jmol-users
> >
> >
>
>
>
>
>
------------------------------------------------------------------------------
Everyone hates slow websites. So do we.
Make your web apps faster with AppDynamics
Download AppDynamics Lite for free today:
http://p.sf.net/sfu/appdyn_sfd2d_oct
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