Phil,
Yes, I am using Safari 6.0.2 with the latest version of Java.
I think the mysterious instance of Firefox was created (left over???) when
Firefox crashed (hung), but I'm not sure. The only relationship to Jmol is that
Firefox often hangs when I'm experimenting with Jmol. I would not have noticed
the presence of this instance if it were not for the temperature problem. The
left side of my Mac Pro (keyboard side and computer bottom) would get really
hot - uncomfortable to touch! I explored the Activity Monitor, and this
instance of Firefox would show 100% CPU. If running, a normal instance of
Firefox would also show, albeit at a much lower CPU usage. The 100% CPU firefox
would not appear in the Finder, and it would not appear in the Force Quit
dialog. The only way out was to reboot with subsequent reduction in the
temperature.
I stopped using Firefox, and I have note seen the temperature problem since.
When I need to run Firefox, I keep touching my computer to make sure the
temperature is OK!
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Nov 12, 2012, at 5:22 PM, Philip Bays wrote:
>
> On Nov 12, 2012, at 5:19 PM, Philip Bays wrote:
>
>>
>> On Nov 12, 2012, at 10:52 AM, Otis Rothenberger wrote:
>>
>>> Bob and Phil,
>>>
>>> This works on Mac with Chrome and Safari. I'm not seeing the Safari error
>>> that Phil sees, however - 6.0.2.
>>
>> I assume that the 6.0.2 is the Safari version you are using? I am using
>> 6.0.1 and have not yet deleted the Apple version of Java, though that should
>> not be an issue here. I am still on Lion, though am about to upgrade --
>> perhaps tomorrow.
>>
>>>
>>> I still get the Mac Firefox error on loading. I'm getting it on a Mac that
>>> never loaded this page before, so I'm pretty sure it's not a cache error.
>>> Interestingly, one time the model did actually load after I closed the
>>> error screen.
>>
>> I see that as well.
>>
>>>
>>> On a tangentially related note, I'm not using Firefox on my Mac any longer.
>>> I'm almost certain that I can relate an unacceptable processor temperature
>>> to an erratic occurrence of a Firefox instance that does not show in the
>>> Finder. This instance runs at 100% CPU, and you cannot use Force Quit to
>>> get rid of it. I'm curious if anyone else has seen this.
>>
>> Otis: how and when does this occur? Do you have to have Firefox running for
>> a while? Are you saying that when you launch Firefox you have more than one
>> instance of it running, though only one is shown in the finder? What about
>> in the Activity Monitor? Does it just occur when you are running JSmol. I
>> am not observing that.
>>
>>>
>>> Otis
>>>
>>> --
>>> Otis Rothenberger
>>> o...@chemagic.com
>>> http://chemagic.com
>>>
>>>
>>>
>>>
>>> On Nov 12, 2012, at 5:59 AM, Philip Bays wrote:
>>>
>>>> Bob:
>>>> This is very nice!!
>>>>
>>>> I note that on Mac Safari, all work except I get two end of file errors:
>>>> HEM, and k04041.cif
>>>>
>>>>
>>>> On Nov 11, 2012, at 11:48 PM, Robert Hanson wrote:
>>>>
>>>>> I am happy to report that JSmol (pure-HTML5 JavaScript-only Jmol) is now
>>>>> loading within-domain and cross-domain binary file types in the three
>>>>> browsers I have tested. (Firefox, Chrome, and MSIE/Windows)
>>>>>
>>>>> see http://chemapps.stolaf.edu/jmol/jsmol/test2.htm
>>>>>
>>>>> This page demonstrates reading PNGJ (PNG + JMOL) files and standard
>>>>> GZ-compressed files in the two top middle links "1hxw.pngj" and
>>>>> "water.xyz.gz"
>>>>>
>>>>> It also reads files directly from pubChem, NCI resolver, and RCSB.
>>>>>
>>>>> The page implements all standard aspects of Jmol, including scripting,
>>>>> opaque and translucent isosurfaces, atomic and molecular orbitals,
>>>>> cartoons, labels, 2D- and 3D-echos, crystallographic symmetry, JavaScript
>>>>> callbacks, etc.
>>>>>
>>>>> Commands that involve threading (hover, spin, animation, minimization,
>>>>> script delay, and animated compare or moveTo, for instance) have not been
>>>>> implemented yet. Writing of JPG and PNG data is not supported; background
>>>>> images are not supported.
>>>>>
>>>>> A complete file set can be unzipped from
>>>>> http://chemapps.stolaf.edu/jmol/JSmol.zip
>>>>>
>>>>> Note that MSIE and Chrome cannot read files on the local drive, but
>>>>> Firefox can.
>>>>>
>>>>> If you are interested in binary file reading, for compatibility with
>>>>> Chrome and MSIE, be aware that you will need to have a base64 server-side
>>>>> piece that will convert the binary data to BASE64 format. This is because
>>>>> only Firefox allows clean (reliable) synchronous binary file transfer.
>>>>> The test2.htm page I have is using the file jsmol.php in
>>>>> http://chemapps.stolaf.edu/jmol/jsmol, which does that and considerably
>>>>> more.
>>>>>
>>>>> Not all binary file types are identified in the JavaScript version right
>>>>> now (this is done by simple file extension check only), but you should be
>>>>> able to rename any file to include ".bin" in its name to force JSmol to
>>>>> read it as a binary file. For example, "c6h6.bin.spartan" should work.
>>>>>
>>>>> A big THANK YOU goes to Atsuhiko Yamanaka for writing a Java version of
>>>>> zlib (www.jcraft.com/jzlib), which reads GZIP and ZIP file data, and
>>>>> which I was able to convert to JavaScript using Zhou Renjian's
>>>>> Java2Script utility (https://code.google.com/p/java2script).
>>>>>
>>>>> Notice that this also means that anyone can read binary files straight
>>>>> into JavaScript on any web page, not just a page involving Jmol, using
>>>>> the JavaScript library we have developed. (see
>>>>> http://chemapps.stolaf.edu/jmol/jsmol/j2s) The combination of Jzlib and
>>>>> Java2Script is very broadly applicable.
>>>>>
>>>>>
>>>>>
>>>>> Bob
>>>>>
>>>>>
>>>>> --
>>>>> Robert M. Hanson
>>>>> Larson-Anderson Professor of Chemistry
>>>>> Chair, Chemistry Department
>>>>> St. Olaf College
>>>>> Northfield, MN
>>>>> http://www.stolaf.edu/people/hansonr
>>>>>
>>>>>
>>>>> If nature does not answer first what we want,
>>>>> it is better to take what answer we get.
>>>>>
>>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>>
>>>>>
>>>>> ------------------------------------------------------------------------------
>>>>> Everyone hates slow websites. So do we.
>>>>> Make your web apps faster with AppDynamics
>>>>> Download AppDynamics Lite for free today:
>>>>> http://p.sf.net/sfu/appdyn_d2d_nov_______________________________________________
>>>>> Jmol-users mailing list
>>>>> Jmol-users@lists.sourceforge.net
>>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>>
>>>> J. Philip Bays
>>>> Emeritus Professor of Chemistry
>>>> Department of Chemistry and Physics
>>>> Saint Mary's College
>>>> Notre Dame, IN 46556
>>>> pb...@saintmarys.edu
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Everyone hates slow websites. So do we.
>>>> Make your web apps faster with AppDynamics
>>>> Download AppDynamics Lite for free today:
>>>> http://p.sf.net/sfu/appdyn_d2d_nov_______________________________________________
>>>> Jmol-users mailing list
>>>> Jmol-users@lists.sourceforge.net
>>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>> ------------------------------------------------------------------------------
>>> Everyone hates slow websites. So do we.
>>> Make your web apps faster with AppDynamics
>>> Download AppDynamics Lite for free today:
>>> http://p.sf.net/sfu/appdyn_d2d_nov_______________________________________________
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>> J. Philip Bays
>> Emeritus Professor of Chemistry
>> Department of Chemistry and Physics
>> Saint Mary's College
>> Notre Dame, IN 46556
>> pb...@saintmarys.edu
>>
>>
>>
>>
>>
>
> J. Philip Bays
> Emeritus Professor of Chemistry
> Department of Chemistry and Physics
> Saint Mary's College
> Notre Dame, IN 46556
> pb...@saintmarys.edu
>
>
>
>
>
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