Hi,
I tried downloading the new 13.1.9 release from Sourceforge, and even
compiling the source code for 13.1.10_dev, but I still have bugs with
ellipsoids. Now, instead of a dot, I see a large square when I try them. It
seems odd to me that it could be system-specific, but just to stay on the
safe side, I'm currently running the Java SE Runtime Environment version
1.7.0_09 on Mageia Linux.
Simone
2012/11/25 Robert Hanson <hans...@stolaf.edu>
> Thank you, Nico, for releasing 13.0.9 and 13.1.9.
>
> The only new features in 13.1.9 involve the MO and isosurface MO commands.
> It's an interesting idea suggested by Leonardo Jorge that
> should have wider applications. Basically it allows one to see the
> contribution to electron density by any subset of orbitals. Especially
> interesting, I think, is the display for degenerate orbitals. This is
> interesting
> because it brings back the molecular symmetry inherent in a pair of
> degenerate orbitals without necessarily showing the total overall electron
> density. I added total electron density as well because that was
> relatively easy to implement. That calculation does take some time,
> however, since it has to calculate the electron density for each occupied
> orbital.
>
> Bob
>
>
> MO or (ISOSURFACE MO) DENSITY
> -- electron density
> -- same as MO [1] SQUARED
> -- takes some time!
>
> MO HOMO|LUMO|NEXT|PREV|[c1 n2 c2 n2...] SQUARED
> -- Squares wave functions as it combines them.
> -- That is, displays the collective electron density (if occupied)
> -- if [...] is not given, groups orbitals by energy
> -- examples:
> load c6h6.smol;mo homo squared // displays symmetric squared sum of
> two degenerate orbitals
> load co2.smol; mo homo squared // displays cylindrical electron
> density
> mo next squared // lumo, provided homo was just displayed
>
> bug fixes:
>
> bug fix: Molden reader tweaks
> bug fix: Jmol application toolbar picking tool should not select none
> bug fix: ellipsoid rendering fails
> bug fix: translucent echo oddities in Jmol 13.1.8
> bug fix: lost volume rendering in 13.1.8
> bug fix: CASTEP density reader fails to reset origin to 0 0 0 in mapping
> bug fix: UTF files with BOM (byte order marker) present not read correctly
> bug fix: UTF files within GZIP or ZIP files not read correctly
> bug fix: set picking draw no longer works in Jmol 13.0 or 13.1
> bug fix: translucent echo backgrounds lost in 13.1.8
> bug fix: select resno=@{n+3} fails in 12.2, 13.0, and 13.1
> bug fix: isosurface AtomicOrbital broken in 13.1.8
>
>
>
>
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
>
>
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--
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