Paul,
You're right. I see that also with both of the other files.
If you load estron.cml first, everything seems OK - even going back to
estron.cml from one of the other files.
This is happening in Safari and Firefox also.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Dec 10, 2012, at 8:33 AM, Paul Pillot wrote:
> That's interesting ! I've made further testing and found out that the
> sequence of file loading can trigger an error with the cml file !
> - reloading the page and :
> 1. load estron.cml
> 2. load vasp.xml
> 3. load water.xodydata
> causes no error
>
> - reloading the page and :
> 1. load vasp.xml or load water.xodydata
> 2 load estron.cml
> triggers the error reading XML message
>
> That's MacOs 10.6.8 with Chrome 23.0.1271.95
>
> Le 10 déc. 2012 à 14:16, Otis Rothenberger a écrit :
>
>> Paul,
>>
>> That loads for me on Mac 10.7.5 with Chrome 23.0.1271.95.
>>
>> Otis
>>
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>> http://chemagic.com
>>
>>
>>
>>
>> On Dec 10, 2012, at 7:58 AM, Paul Pillot wrote:
>>
>>>
>>>
>>>
>>> On Chrome MacOSX.6
>>> no error with vasp.xml and water.xodydata.
>>> estron.cml reports the following error :
>>> FileManager.getAtomSetCollectionFromFile(estron.cml)
>>> starting HoverWatcher_7
>>> FileManager opening http://chemapps.stolaf.edu/jmol/jsmol/estron.cml
>>> The Resolver thinks XmlCml
>>> call loadScript org\jmol\adapter\readers\xml\XmlCmlReader.js
>>> call loadScript org\jmol\adapter\readers\cifpdb\CifReader.js
>>> call loadScript org\jmol\api\JmolLineReader.js -- required by
>>> org.jmol.adapter.readers.cifpdb.CifReader
>>> call loadScript org\jmol\adapter\smarter\Structure.js
>>> Time for openFile(estron.cml): 2361 ms
>>> File Error:Error reading XML: Cannot call method 'clear' of null
>>> for file http://chemapps.stolaf.edu/jmol/jsmol/estron.cml
>>> type xml
>>> starting HoverWatcher_8
>>> script ERROR: Error reading XML: Cannot call method 'clear' of null
>>> for file http://chemapps.stolaf.edu/jmol/jsmol/estron.cml
>>> type xml
>>> ----
>>> load >> "estron.cml" <<
>>> Script completed
>>> Jmol script terminated
>>>
>>> Paul
>>>
>>> PS: (this may help) jQuery offers possibilities for parsing XML documents
>>> with the $() function.
>>> Here is a code example I've made to fetch pubmed abstracts from a PDB ID :
>>> $.ajax({
>>> url:
>>> "http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi";,
>>> data: {
>>> db: "pubmed",
>>> id: pId,
>>> retmode: "xml",
>>> rettype: "abstract"
>>> },
>>> success: function(t){
>>> var $xml = $(t);
>>> var txt = '';
>>> var pmc = $xml.find("ArticleId[IdType='pmc']").text();
>>> var volume = $xml.find("Volume").text();
>>> var revue = $xml.find("Title").text();
>>> var pages = $xml.find("MedlinePgn").text();
>>> var annee = $xml.find("Year:first").text();
>>> var doi = $xml.find("ArticleId[IdType='doi']").text();
>>> var abstract = $xml.find("AbstractText").text();
>>>
>>> txt += '<br /><span class="label label-info">in</span>
>>> '+revue+' '+annee+' n°'+volume+ ' p'+pages+' ';
>>> ...
>>> });
>>> Le 10 déc. 2012 à 13:22, Robert Hanson a écrit :
>>>
>>>> I'd appreciate people testing
>>>> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 for those top
>>>> middle links involving loading of XML files (vasp.xml, estron.cml, and
>>>> water.xodydata). This uses the browser's own HTML document object model to
>>>> parse the XML files. It seems to be working on Firefox and MSIE under
>>>> Windows.
>>>>
>>>> If you get a file loading error, please click "show" to see the console,
>>>> clip that, and send it to me off-list.
>>>>
>>>> I know about the "this.atts is null" error that arises when you first load
>>>> vasp.xml and then load estron.cml. Trying to track that one down.
>>>>
>>>> Thanks,
>>>>
>>>> Bob
>>>>
>>>> --
>>>> Robert M. Hanson
>>>> Larson-Anderson Professor of Chemistry
>>>> Chair, Chemistry Department
>>>> St. Olaf College
>>>> Northfield, MN
>>>> http://www.stolaf.edu/people/hansonr
>>>>
>>>>
>>>> If nature does not answer first what we want,
>>>> it is better to take what answer we get.
>>>>
>>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>>
>>>>
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