Based on current (generated) source code in
http://chemapps.stolaf.edu/jmol/jsmol/jsmol.htm
this could be enough (portions in red added over the existing code):
<div id="jmolApplet0_appletinfotablediv"
style="width:300px;height:300px;position:relative;">
<div id="jmolApplet0_appletdiv" etc >
<canvas id="jmolApplet0_canvas2d" etc >
</canvas>
</div>
<div id="jmolApplet0_infotablediv" etc >
</div>
<div id="jmolApplet0_coverdiv" style="width:100%; height:100%;
position:absolute; top:0; left:0;">
</div>
</div>
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