Thanks Mike,
I'll try that. I found
http://www.c-point.com/javascript_tutorial/special_characters.htm which is
similar.
I think I may also be having problems with the symmetry of the molecules.
defaultOrientationMatrix = [
[-0.0100188255 0.3289951 0.9442785]
[0.78089386 -0.5872656 0.21289393]
[0.62458336 0.73951423 -0.25102657] ]
Time for openFile(model/ltf/SF5.spardir): 31 ms
reading 6 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty
"auxiliaryInfo" to inspect them.
defaultOrientationQuaternion = {0.6760683 0.41042045 0.5801418 0.19473635}
Use "set autoLoadOrientation TRUE" before loading or "restore orientation
DEFAULT" after loading to view this orientation.
Default Van der Waals type for model set to Babel
6 atoms created
ModelSet: not autobonding; use forceAutobond=true to force automatic bond
creation
1 atoms selected
QueueThread0_59 exception java.lang.NullPointerException
java.lang.NullPointerException
at org.jmol.modelset.AtomCollection.getHybridizationAndAxes(Unknown Source)
at org.jmol.viewer.Viewer.getHybridizationAndAxes(Unknown Source)
at org.jmol.shapesurface.LcaoCartoon.createLcaoCartoon(Unknown Source)
at org.jmol.shapesurface.LcaoCartoon.createLcaoCartoon(Unknown Source)
at org.jmol.shapesurface.LcaoCartoon.setProperty(Unknown Source)
at org.jmol.viewer.ShapeManager.setShapePropertyBs(Unknown Source)
at org.jmol.script.ScriptEvaluator.setShapeProperty(Unknown Source)
at org.jmol.script.ScriptEvaluator.lcaoCartoon(Unknown Source)
at org.jmol.script.ScriptEvaluator.processShapeCommand(Unknown Source)
at org.jmol.script.ScriptEvaluator.commandLoop(Unknown Source)
at org.jmol.script.ScriptEvaluator.dispatchCommands(Unknown Source)
at org.jmol.script.ScriptEvaluator.executeCommands(Unknown Source)
at org.jmol.script.ScriptEvaluator.startEval(Unknown Source)
at org.jmol.script.ScriptEvaluator.evaluateCompiledScript(Unknown Source)
at org.jmol.viewer.ScriptManager.evalStringWaitStatusQueued(Unknown Source)
at org.jmol.viewer.Viewer.evalStringWaitStatusQueued(Unknown Source)
at org.jmol.thread.ScriptQueueThread.runNextScript(Unknown Source)
at org.jmol.thread.ScriptQueueThread.run1(Unknown Source)
at org.jmol.thread.JmolThread.run(Unknown Source)
All the best
Nick
--
3D Organic Animations http://www.chemtube3d.com
Tel: +44 (0)151-794-3506 (3500 secretary)
On 9 Mar 2013, at 17:33,
<[email protected]<mailto:[email protected]>>
wrote:
Message: 3
Date: Sat, 9 Mar 2013 11:32:57 -0600
From: Michael Evans <[email protected]<mailto:[email protected]>>
Subject: Re: [Jmol-users] Nested quotes problem
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Message-ID:
<capvvrdyamnwpnlzxn4ibtjdzza6fzehgcxiin2ezymrg9co...@mail.gmail.com<mailto:capvvrdyamnwpnlzxn4ibtjdzza6fzehgcxiin2ezymrg9co...@mail.gmail.com>>
Content-Type: text/plain; charset="iso-8859-1"
Nick,
Try \' rather than " around sp2a. That worked for me (I was working on
something similar in JSmol yesterday).
Cheers, Mike
On Saturday, March 9, 2013, Greeves, Nick wrote:
Hi All,
I am trying to use lcaoCartoon within a hot spot image map.
The HTML looks like this
<map name="Map" id="Map"><area shape="rect" coords="9,1,328,344"
href="javascript:jmolScript('load model/ltf/SF5.spardir;moveto 1.0 { -512
700 -499 116.04};select (sulfur);lcaoCartoon delete create "sp2a";')"
alt="SF4" />
This does nothing when clicked. In contrast the same command operating
on SF5.spardir in Jmol.jar
select (sulfur);lcaocartoon delete create "sp2a";
works fine.
I suspect this is a problem with nested quotes. Is the " after create
being interpreted as the end of the href command?
So the question is, are there any other types of quote I can use or is
there another way of doing it?
Best regards
Nick
--
Nick Greeves via OS X Mail
Director of Teaching and Learning
Department of Chemistry
University of Liverpool
Donnan and Robert Robinson Laboratories
Crown Street, LIVERPOOL L69 7ZD U.K.
Email address: [email protected]<mailto:[email protected]>
<javascript:_e({}, 'cvml',
'[email protected]<mailto:[email protected]>');>
WWW Pages: http://www.chemtube3d.com<http://www.chemtube3d.com/>
Tel: +44 (0)151-794-3506 (3500 secretary)
Dept Fax: +44 (0)151-794-3588
--
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
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