Works great! I had forgotten about backticks because I was using "system."
I had some awful syntax issues (I'm on windows - my double quotes versus
single quotes seem to work backwards form what your code uses sometimes -
I'm on windows, wonder if that matters), but got it working, which I would
not have without your code to make me believe it actually did work given
all the ways I wrote it that did not work (just due to syntax uggghhh!).
Thanks!
One largely-unrelated question: When outputting an image file, if you are
looking at the bound box straight on and then export, Jmol runs the edge of
the image RIGHT up to the bound box. Not only does this not give any margin
space, but I think it actually cuts off half of the outermost atoms
(presumably because if you display in sticks and balls, atoms have width,
but I'm guessing that bound box goes through the center of the atoms). Is
there any way to ask the bound box, or the "write" routine, to provide some
margin space?
Sincerely,
James Ryley, PhD, Patent Agent
SumoBrain: Intellectual Property Solutions & Data
AcclaimIP <https://www.acclaimip.com/> |
FreePatentsOnline.com<http://www.freepatentsonline.com/>|
SumoBrain.com <http://www.sumobrain.com/> |
BioMedSearch.com<http://www.biomedsearch.com/>
This communication is confidential and may be subject to legal privilege.
Nothing contained herein should be construed as legal or patenting advice.
On Sun, Aug 18, 2013 at 3:03 PM, Rolf Huehne <[email protected]> wrote:
> Am 18.08.2013 20:09, schrieb Rolf Huehne:
> > In Perl it could look like this (not tested):
> >
> > --------------
> > chdir("my_jmol_path");
> > my @jmol_output = `java -jar JmolData.jar -n -J 'function
> > my_print(value) {for (var z in value.lines) { print "DATA:\t" + z; }}
> > my_print("Hello from Jmol"); load =1deh; my_print(script("show
> > orientation"));'`;
> >
> > foreach my $jmol_output_line(@jmol_output) {
> > my $data = substr($jmol_output_line, 5);
> > print $data;
> > }
> > --------------
> >
> Sorry, I forgot the test for "DATA: " at the beginning of the output loop:
>
> if (substr($jmol_output_line, 0, 5) eq "DATA: ") {
> ...
> }
>
> Regards,
> Rolf
>
>
> --
>
> Rolf Huehne
> Postdoc
>
> Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI)
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