I use MacMolplt to stitch together GAMESS/ Firefly IRC output files. When you add extra frames there is a check box to reverse the order. We have used this for all the animations on chemtube3d.com
All the best Nick Sent from my iPad 2 On 20 Aug 2013, at 05:25, "[email protected]" <[email protected]> wrote: > > On Mon, Aug 19, 2013 at 3:22 PM, Whitwell, George > <[email protected]<mailto:[email protected]>> wrote: > > Hi, > > I have GAMESS output from both sides of the reaction coordinates from a > Cl-CH3-Br anion intermediate as an example of an SN2 reaction. I can load > both output files in Jmol as different models and animate them consecutively; > however, since they both run downhill, it isn't really the sequence of the > desired SN2 trajectory. > > > > How can I reverse the order of the frames of one model and is there a > preferred way to save the collection of frames from both models in one file? > Also, is Jmol reading the energy of each structure and can I access that as a > variable? > > > > Thanks for any help, > > George > > > > Dr. George E. Whitwell > Associate Professor - Chemistry > North Carolina Wesleyan College ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
