Dear Group, I am a developer in www.bindingdb.org using Jmol for some displays, like http://bdb4.ucsd.edu/bind/jmol_pdb.jsp?pdbid=1MRS&monomerid=50132286&polymerid=p50000494&seq=100&title=pound34Thymidylate%20kinasepound34%20AND%20pound34CHEBI:270373pound34, and multiple layers http://bdb4.ucsd.edu/data/surflex/1G6S_S3P/1G6S_S3P.html.
But a similar multiple layer http://bdb4.ucsd.edu/bind/surflex.jsp?PDB=1GSI&HET=TMP does not behave where not all the atoms and bonds in protein are cartooned. All the multiple layer displays are wrote with the same procedures. A part of javascripts is listed in the the following for your review. var jmolcmds = [ "load http://bdb4.ucsd.edu/data/surflex/1GSI_TMP/1GSI.pdb";, "set appendNew true", "load APPEND http://bdb4.ucsd.edu/data/surflex/1GSI_TMP/1GSI_ligand0.mol2";, "set appendNew true", "load APPEND http://bdb4.ucsd.edu/data/surflex/1GSI_TMP/1GSI-results.mol2";, "set frank off", "model 0", "select model=1.1; spacefill off; cpk off; wireframe off; cartoon; color cartoon translucent; zoom 200", "select model=2.1; wireframe 80; spacefill 0.35; center hetero; color translucent; zoom 200", "select model=3; wireframe off; cpk off; spacefill off", "background white", "display all" The files are could be downloaded through the URLs. Thank you in advance for your diagnoses and solution. ------------------- All the best to you, Tiqing Liu, Ph. D. ------------------------------------------------------------------------------ Introducing Performance Central, a new site from SourceForge and AppDynamics. Performance Central is your source for news, insights, analysis and resources for efficient Application Performance Management. Visit us today! http://pubads.g.doubleclick.net/gampad/clk?id=48897511&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
