Amjad,
I have switched from Jmol Java applet to JSmol. It was very easy.
(1) After downloading JSmol into a folder called jsmol, I put a symlink to it
in a folder in my application, called /nosession.
(2) I changed every instance of
<script src="/nosession/jsmol/Jmol.js" type="text/javascript"></script>
in my application to
<script src="/nosession/jsmol/JSmol.min.js" type="text/javascript"></script>
<script src="/nosession/jsmol/Jmol2.js" type="text/javascript"></script>
The order of these two resources was important.
(3) In Jmol2.js, I changed
Jmol.Info = {
jarPath: "java",
jarFile: "",
j2sPath: "j2s",
to
Jmol.Info = {
jarPath: "/nosession/jsmol/java",
jarFile: "",
j2sPath: "/nosession/jsmol/j2s",
That's all it took. The only problem I encountered was that one of the Jmol
methods I was using, jmolLoadInline(), we not yet implemented in Jmol2.js. Bob
Hanson kindly provided me with a fresh version of Jmol2.js that had the method.
-- Bob G.
From: Amjad Farooq <[email protected]<mailto:[email protected]>>
Reply-To:
<[email protected]<mailto:[email protected]>>
Date: Tue, 24 Sep 2013 10:26:34 -0400
To: <[email protected]<mailto:[email protected]>>
Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol --
part deux
Hi Robert,
I am utterly confused now. What is this Jmol2.js? Are you saying that using
this file one can run Jmol on the client machine even if it does not have a
Java installed? In other words, Jmol2.js runs Java from the server side? Is
that correct?
Can someone please elaborate on this point. I recently switched to JSmol simply
because many of my collaborators complained about my Jmol interface not running
on their machines due to Java issues. Now, if Jmol2.js can eliminate the need
for client to have a fully functional Java, then why do I need to to switch to
JSmol?
I am lost on this.
Amjad
AMJAD FAROOQ PhD DIC | Associate Professor
Dept of Biochemistry & Molecular Biology | Miller School of Medicine |
University of Miami | Miami | FL 33136
Located @ Gautier Building #217 | Mail @ 1011 NW 15th Street #217, Miami , FL
33136
[email protected]<mailto:[email protected]> | off 305-243-2429 | lab
305-243-9799 | fax 305-243-3955 | www.farooqlab.net<http://www.farooqlab.net>
On Tue, Sep 24, 2013 at 9:49 AM, Grossman, Robert B
<[email protected]<mailto:[email protected]>> wrote:
I downloaded the new Jmol2.js file you gave me, and it works great! Thanks.
So with this new JSmol, all the Java is now running server-side, is that
correct? I no longer have to worry about whether the user's Java is enabled?
From: Robert Hanson <[email protected]<mailto:[email protected]>>
Reply-To:
<[email protected]<mailto:[email protected]>>
Date: Mon, 23 Sep 2013 22:18:28 -0500
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Subject: Re: [Jmol-users] difficulties encountered in switching to JSmol --
part deux
There may be a few differences like that. For now, just use
Jmol.script(yourAppid, 'load DATA "mydata"\n' + yourInlineData + '\nEND
"mydata" ')
or give this one a try:
http://chemapps.stolaf.edu/jmol/jsmol/js/Jmol2.js
On Mon, Sep 23, 2013 at 3:15 PM, Grossman, Robert B
<[email protected]<mailto:[email protected]>> wrote:
OK, I read a little further down in the Wiki and saw that I could accomplish
the switch another way: leave the calls to jmolApplet(), etc. alone and instead
use both JSmol.min.js and Jmol2.js as resources. So I did so, and I also added
a symlink to the jsmol/j2s folder in the same folder as the page that calls the
"applet". So now JSmol loads, but I get this alert:
jmolLoadInline not implemented
So, any chance of this method being implemented in the near future? Or maybe
it has already been implemented in a more recent version? I'm using
jsmol-13.3.4. (BTW, I tried to download JSmol 13.3.5 from SourceForge, but
decompression failed. Instead I downloaded one of the 13.3.4 versions.)
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Robert M. Hanson
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http://www.stolaf.edu/people/hansonr
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