Hi Charles,
You need to update your JSmol.
This bug has been fixed in Jmol/JSmol 13.2.6:
bug fix: chains improperly selected in JSmol/HTML5
(you are still running 13.2.4)
Best,
Oliver
On Fri, Nov 15, 2013 at 9:11 PM, Charles Gasser <[email protected]>wrote:
> Help!
>
> I am trying to select individual proteins in structures of multiprotein
> complexes in Jsmol.
>
> The following commands work great in Jmol:
>
> Select :A
> Select :B
> Select *:A
> Select *:B
>
> Where they select the indicated proteins. In duplicate pages made in
> Jsmol with the same .pdb file, these commands select all of the protein!
>
> I know that Jsmol can differentiate the chains because if I do 'select
> protein; color chain;' then the different chains are colored differently.
> But I am unable to individually select them to change the view at my
> command.
>
> Is there another method of selecting part of a molecule (without the need
> to discretely select all atoms) that works in Jsmol. If you can reply to
> my e-mail.
>
> You can compare these two pages. The first in Jmol where individual
> selection works:
>
>
> http://www.mcb.ucdavis.edu/courses/molec-structures/121struct/Nuc_Frames.html
>
> The second in Jsmol where individual chain selection does not work (when I
> try it from the console or from editing the file by adding a command on the
> page).
>
> http://www.mcb.ucdavis.edu/courses/jsmol/Nucleosomejsa5.htm
>
> Thanks,
> Chuck Gasser
> [email protected]<mailto:[email protected]>
> ==============
> Charles S. Gasser
> Professor
> Dept. of Molecular and Cellular Biology
> University of California, Davis
> 1 Shields Ave.
> Davis, CA 95616
>
> 104 Briggs Hall
> 530 752-1013
>
>
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