Am 19.12.2013 13:39, schrieb Jakubowski, Henry: > Hi, > > I have what I believe is a trivial problem (for everyone but me) on > converting Jmol 12 files to Jmol 14/JSmol, but as I am more of a > cut-and-paste creator of Jmol files, I thought I would seek outside help. > > I’ve created about 100 Jmol files > (http://employees.csbsju.edu/hjakubowski/classes/ch331/bcintro/list_of_Chime.htm) > to accompany my web biochemistry book > (http://employees.csbsju.edu/hjakubowski/classes/ch331/bcintro/default.html > ). > > They are all based on Jmol 12. I just converted one after downloading > the latest version of Jmol (14.1.3) yesterday. I modified a template > model from David Marcey and Molvisions and pasted in button commands > from my previous Jmol 12 verison. It works well on my PCs using all > browsers. > > Here is the new > file:http://employees.csbsju.edu/hjakubowski/Jmol14/Nucleosome/Nucleosome.htm > . > > Somehow I magically thought it would work on my Nexus Android tablet as > well. It didn’t as the file loads as a Jmol and not a JSmol file. > > I would greatly appreciate it if someone could look at the code and > suggest changes I could make to allow my files to work on any platform > (if this is possible). I think the fix is trivial (but again not for me). > > Once I get this file working well, I want to use it as a template to > convert the rest over time. > JSmol is working with your example, at least on my Laptop. I could activate it sucessfully by adding the corresponding parameter to your example URL: http://employees.csbsju.edu/hjakubowski/Jmol14/Nucleosome/Nucleosome.htm?_USE=HTML5
If this also works on your Android tablet it seems "just" to be a problem of the automatic switch. Maybe the "magic" behind this switch doesn't work well enough yet. One way to overcome this would be by adding a manual switch between Jmol and JSmol. Another way would be to use JSmol as default. But this will depend for example on the number of atoms in the other structures loaded in your pages. On my configuration JSmol handles the 13,000 Atoms from the nucleosome page fast enough. But I know that in other configurations JSmol might be ten times slower, which might be too slow as a default. Or one could try to improve the automatic switch, for example by adding an Android-specific switch. Although there is Java supposed to be generally available on Android it is said to need specifically compiled Java programs. So the standard Jmol applet should never work on Android platforms. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: rhue...@fli-leibniz.de Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ Rapidly troubleshoot problems before they affect your business. Most IT organizations don't have a clear picture of how application performance affects their revenue. With AppDynamics, you get 100% visibility into your Java,.NET, & PHP application. Start your 15-day FREE TRIAL of AppDynamics Pro! http://pubads.g.doubleclick.net/gampad/clk?id=84349831&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
