The depth command for 3D echoes is nice! It works well, Bob. For the
7-transmembrane helix protein I’m working with, a depth of 1010 puts the echo
outside of the labeled helix barrel, but not out in front of neighboring
helices. So the depth feature solves the “burying” problem.
By applying a center justification to it as well, it is now riding along in the
center of the barrel even when the structure spins.
So in case this sort of label is useful to others... I chose a long enough
range of helix residues that the average position would be central to the
barrel, used the depth feature to put it just in front of the barrel, center
justified it as follows, and set the font size, weight, and color, as follows:
set echo myecho {200-225}; echo G;
set echo myecho depth 1010;
set echo myecho center;
font echo 22 sans bold; color echo white
Frieda
On May 12, 2014, at 1:36 AM, Bob Hanson <[email protected]> wrote:
> Frieda. See http://chemapps.stolaf.edu/jmol/zip/Jmol.jar
>
> Sent from my stupid iPhone
>
> On May 11, 2014, at 10:11 AM, Bob Hanson <[email protected]> wrote:
>
>> Needs a new feature
>>
>> Set echo myecho depth x.x
>>
>> For 3d echos. Done. Values >= 1000 are relative to original point. So you
>> might want
>>
>> Set echo myecho @1
>>
>> Set echo myecho depth 1020
>>
>> 20% of depth in front of atom 1
>>
>> Will get uploaded tomorrow.
>>
>> Sent from my stupid iPhone
>>
>> On May 10, 2014, at 6:22 PM, Frieda Reichsman <[email protected]> wrote:
>>
>>> Hi All,
>>>
>>> I’m trying to get a label to sit still on a rocket barrel helix while the
>>> structure is spinning. Since the rocket barrel is drawn inside the helix
>>> diameter, there are no atoms serendipitously positioned for this purpose. I
>>> tried positioning it as the average of two residues that are opposite each
>>> other on the helix:
>>> set echo myecho {221-223}; echo test;
>>> but that gets buried inside the rocket barrel. I can see the “st” poking
>>> out.
>>>
>>> Is there a way to get it to appear in front of the barrel, analogous to
>>> “set labelFront on”?
>>>
>>> Frieda
>>>
>>>
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