Hi Eric

> Can I change the chain name for the selected atoms? I tried
> 
> {selected}.chain = "G"

The doc says you cannot assign chain name
http://chemapps.stolaf.edu/jmol/docs/?ver=14.0#atomproperties
(5th column)

Maybe you can use a Jmolscript variable or a "define" id instead.


> On the other hand I can change element

Yes!

> but mouseOver a spacefilled sulfur (yellow!) still reports the element as O.

Probably because the hover gives the name of the atom, not its 
element.  "select" tells you, also you can use "label %e" or "label 
%[element]" to check
And there is "set hoverLabel" to customize the hover text



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