You can also generate a distance monitor by double-clicking two invisible atoms. The monitor is out in black space!
>Date: Mon, 09 Jun 2014 16:15:48 -0400 >To: [email protected] >From: Eric Martz <[email protected]> >Subject: Re: [Jmol-users] Hover reports for invisible atoms > >Dear Bob, > >Sorry to be the bearer of bad news. This bug is >still present in 14.0.17. It is quite serious. >Not only are atoms mis-identified both in hover >reports and pickcallbacks, but this causes >incorrect mouse-initiated selections / hidings >etc. in FirstGlance. This bug was not present in 14.0.2 or 13.0.16. > >It is easily reproduced. I sent you a snapshot, >and so did Jaime Prilusky. If you cannot >reproduce it, we need to figure out why! > >How to reproduce the bug: > >>>In application 14.0.17, > > >>>load =1d66 >>>restrict water > > >>>Now when you mouseover black area between the water molecules you >>>will see hover reports for amino acids and nucleotides. > >I am using OS 10.9.3 Mavericks, Java 1.7.0_60. >As stated in my original report, I also saw it >in Windows 7, same Java version, with Jmol app 14.1.16. > >Eric > >>Date: Mon, 02 Jun 2014 01:14:15 -0400 >>To: [email protected] >>From: Eric Martz <[email protected]> >>Subject: Re: [Jmol-users] Hover reports for invisible atoms >> >>I see this with the latest Java 1.7.0_60 on OS >>X (Mavericks, 10.9.3). I added "background >>white" before taking the attached snapshot >>(which will appear at the end of this message, >>if it survives Sourceforge; I'm also sending this CC directly to you, Bob.) >> >>I also see the hover report for invisible atoms >>in Windows 7, same Java version, Jmol app 14.1.16. >> >>In the attached snapshot, the mouse was just >>below the hover report, centered under it. >>There are no visible atoms in the vicinity. >> >>The big problem with this is that when you are >>trying to identify a visible atom via the hover >>report, quite often the report is about an >>invisible atoms that is "in front of" the >>visible atom. I've had this happen a lot >>recently, including in my teaching in May. >> >>Regards, Eric >> >>At 6/1/14, Robert Hanson wrote: >>>You're going to have to send me a picture >>>-- I can't reproduce the problem. >>> >>> >>>On Sun, Jun 1, 2014 at 4:59 PM, Eric Martz >>><<mailto:[email protected]>[email protected]> wrote: >>>Dear Bob, >>>For quite a while I've been noticing hover reports for invisible >>>atoms, but didn't find a reproducible simple example till now: >>>In application 14.1.16, >>>load =1d66 >>>restrict water >>>Now when you mouseover black area between the water molecules you >>>will see hover reports for amino acids and nucleotides. >>>I see this also happening in 14.0.13 and in 14.0.7. >>>I assume this is a bug. >>>I do NOT see it happening in 14.0.2 or 13.0.16. >>>Regards, Eric >> >>/* - - - - - - - - - - - - - - - - - - - - - - - - - - - >>Eric Martz, Professor Emeritus, Dept Microbiology >>U Mass, Amherst -- http://Martz.MolviZ.Org >> >>Top Five 3D MolVis Technologies http://Top5.MolviZ.Org >>FirstGlance: 3D Views in Nature - http://firstglance.jmol.org >>3D Protein Wiki with Scene-Authoring Tools http://Proteopedia.Org >>Biochem 3D Education Resources http://MolviZ.org >>ConSurf - Find Conserved Patches in Proteins: http://consurf.tau.ac.il >>Atlas of Macromolecules: http://atlas.molviz.org >>Interactive Molecules in Public Spaces http://MolecularPlayground.Org >>Workshops: http://workshops.molviz.org >>- - - - - - - - - - - - - - - - - - - - - - - - - - - */ ------------------------------------------------------------------------------ HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions Find What Matters Most in Your Big Data with HPCC Systems Open Source. Fast. Scalable. Simple. Ideal for Dirty Data. Leverages Graph Analysis for Fast Processing & Easy Data Exploration http://p.sf.net/sfu/hpccsystems _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
