Hello Vinushka 

Your JS code is outdated. Since you are using 14.0.17, you should 
just call one JS file:

 " <script type="text/javascript" 
 src="/charmming/js/jsmol/JSmol.min.js"></script>

Please try that and see if the error goes away.


> Also, I have noticed that pdbaddhydrogens does not add hydrogens to 
> water oxygens. Is this intended behavior?

Probably. There is no way how you can imagine what the direction of 
bonds to those Hs would be, right?


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