On 06/16/2014 12:18 PM, Andreas Truszkowski wrote: > Hi, > Am 16.06.2014 11:52, schrieb Rolf Huehne: >> For this you can use the 'file.model' syntax in atom expressions (see >> http://jena3d.fli-leibniz.de/doc/jmol_scripting/index.htm#atomexpressions). >> Assuming that both models are in the first file loaded, you could use this: >> display (1.1 and *:A) or (1.2 and *:B) >> >> Or as a shortcut: >> display *:A/1.1 OR *:B/1.2 >> >> And if only one file is loaded even shorter: >> display *:A/1 OR *:B/2 > I tried the last expression before, but it hasn't worked. That's why I > got here... > > Also the expression: > display ((1.1 and *:A) or (1.2 and *:B)) and not hydrogen; restrict > protein;center {visible}; > does not provide the expeted result. Only the full first model is > visible as always at startup. > > And its only a single file... > Sorry, I thought the problem was to reduce the view. It wasn't obvious from your question that you already had trouble viewing the whole biological unit.
There is another command involved here, the 'frame' command (see http://jena3d.fli-leibniz.de/doc/jmol_scripting/index.htm#frame) By default only the first model of a file is loaded. You need to run the command 'frame all' to see all models at once. Then you can use the 'display' command to restrict the view. But you must be careful not to loose track which setting was made by both commands. In the following example you will see nothing because the setting of the other command prevents the display of anything: frame 2; display *:A/1; Or in this example you will only see model 2: frame 2; display all If you work with the display/hide commands I would recommend to set always 'frame all' first, unless you know what you are doing and always keep the current 'frame' command setting in mind. Regards, Rolf -- Rolf Huehne Postdoc Leibniz Institute for Age Research - Fritz Lipmann Institute (FLI) Beutenbergstrasse 11 07745 Jena, Germany Phone: +49 3641 65 6205 Fax: +49 3641 65 6210 E-Mail: [email protected] Website: http://www.fli-leibniz.de Scientific Director: Prof. Dr. K. Lenhard Rudolph Head of Administration: Dr. Daniele Barthel Chairman of Board of Trustees: Dennys Klein VAT No: DE 153 925 464 Register of Associations: No. 230296, Amtsgericht Jena Tax Number: 162/141/08228 ------------------------------------------------------------------------------ HPCC Systems Open Source Big Data Platform from LexisNexis Risk Solutions Find What Matters Most in Your Big Data with HPCC Systems Open Source. Fast. Scalable. Simple. Ideal for Dirty Data. Leverages Graph Analysis for Fast Processing & Easy Data Exploration http://p.sf.net/sfu/hpccsystems _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
