send it to hans...@stolaf.edu not the list.
So you basically have a mistake in your script writing. That's all.
On Sun, Jul 13, 2014 at 12:32 AM, Otis Rothenberger <osrot...@chemagic.com>
wrote:
> Bob,
>
> I tried to send the state script, but it was too large. Here's the only
> error that I see:
>
> script compiler ERROR: command expected
> ----
> <<<<
>
> It looks like it's choking on the append portion of the state script.
>
> Otis
>
>
>
> On Sat, Jul 12, 2014 at 12:31 PM, Robert Hanson <hans...@stolaf.edu>
> wrote:
>
>> I don't think that is the issue. But this is very inefficient:
>>
>>
>> for (var i = 1; i < {*}.length +1; i++){ {*}[i].atomno = i }
>>
>> What you want there is:
>>
>> var n = {*}.length; for (var i = 1; i <= n; i++){ {*}[i].atomno = i }
>>
>> Still that should not be it. Aren't you getting some sort of error
>> messages?
>>
>> I would use
>>
>> set debugscript
>>
>> first, then run that and see what it gives.
>>
>> Bob
>>
>>
>>
>>
>>
>>
>>
>>
>>
>>
>> On Wed, Jul 9, 2014 at 10:58 PM, Otis Rothenberger <osrot...@chemagic.com
>> > wrote:
>>
>>> Bob,
>>>
>>> I use the following script to duplicate a model in the Jmol window:
>>>
>>> scpt = 'center;var mod2 = "' + Jmol.getPropertyAsString(jmolApplet0,
>>> "extractModel") + '";';
>>> scpt += 'set echo top left;echo;set appendNew false;var z=' + bbMax() +
>>> ';';
>>> scpt += 'select *;translateSelected {@z @z 0};load APPEND "@mod2";';
>>> scpt += 'hover "";select *;wireframe 0.15;spacefill 23%;boundbox
>>> {*};centerat boundbox;minimize CLEAR;';
>>> scpt += 'for (var i = 1; i < {*}.length +1; i++){ {*}[i].atomno = i }';
>>> Jmol.script(jmolApplet0, scpt);
>>>
>>> bbMax() simply calculates the longest dimension of the bound box. This
>>> all works, BUT the resulting model pair has a Jmol state problem. I can
>>> write a state, but it will not restore. Is my atomno renumbering screwing
>>> this up?
>>>
>>> The renumbering may seem strange, but I'm working with edited models,
>>> and the renumbering prevents atomno overlap produced by duplicating edited
>>> models.
>>>
>>> This is not a huge problem. I'm just curious if the renumbering is the
>>> guilty party.
>>>
>>> Otis
>>>
>>> --
>>> Otis Rothenberger
>>> o...@chemagic.com
>>>
>>>
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>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> Chair, Department of Chemistry
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>>
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>>
>>
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>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>
>
> --
> Otis Rothenberger
> o...@chemagic.com
>
>
> ------------------------------------------------------------------------------
>
> _______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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