Hi Brenton 1. If you edit manually the pdb file, you can add CONECT records for the double bonds. But it is better -and more flexible- to use Jmol scripts (which may be embedded in the pdb file or applied from within the page) with the "connect" command. This allows to set partial and aromatic bonds.
2. Jmol has "calculate aromatic" and "connect aromatic". You may or not like how they look, but it is the same idea as in your example. You could also draw a ring inside the atom ring (cycle) to depict aromaticity; that is not automatic, but a decoration you might build using the "draw" command. ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
