Thanks a bunch. Yes, the usual practice is to contour at +_3 sigma, but I can add SIGN to get both.
Dale P.S. If this were the CCP4BB I'd argue about the misuse of the word "sigma" when all you are talking about is a simple rms but I doubt I could get you to change your syntax at this point. ;-) On 11/24/2014 6:53 PM, Robert Hanson wrote: > Jmol.___JmolVersion="14.3.9_2014.11.24" > > new feature: isosurface "==1blu" -- difference map; defaults to sigma=3 > > > > On Mon, Nov 24, 2014 at 8:39 PM, Robert Hanson <[email protected] > <mailto:[email protected]>> wrote: > > (how many sigma?) > > On Mon, Nov 24, 2014 at 8:24 PM, Robert Hanson <[email protected] > <mailto:[email protected]>> wrote: > > How do you set the cutoff for that? > > Note that you can use the full call directly: > > isosurface "http://eds.bmc.uu.se/eds/dfs/bl/1blu/1blu_diff.omap"; > > > > On Mon, Nov 24, 2014 at 5:01 PM, Dale Tronrud > <[email protected] <mailto:[email protected]>> wrote: > > > I would like to display both the 2Fo-Fc and Fo-Fc maps > from the > Electron Density Server at the same time. When I issue the > command > "ISOSURFACE =3EOJ" for example, I get the 2Fo-Fc map, but I > don't see > a syntax for getting the difference map. > > If I could change edsUrlFormat to change the downloaded > file name I > expect that ISOSURFACE would download the map I want, but I > don't see > how to access such jsmol internals while within a jsmol script. > > Any advice on how to do this would be appreciated. > > Dale Tronrud > > FYI: The value of edsUrlFormat that I want is > "http://eds/bmc.uu.se/eds/dfs/%LC13/%LCFILE/%LCFILE_diff.omap";. > > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT > Server > from Actuate! Instantly Supercharge Your Business Reports > and Dashboards > with Interactivity, Sharing, Native Excel Exports, App > Integration & more > Get technology previously reserved for billion-dollar > corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk > _______________________________________________ > Jmol-users mailing list > [email protected] > <mailto:[email protected]> > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Department of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Department of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Department of Chemistry > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk > > > > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
