Brenton, On the script you currently use, you should be able to add pdbAddHydrogens before loading, as here:
set pdbAddHydrogens true; load= 2ace; Regards, Jaim > On Apr 21, 2015, at 8:56 AM, Brenton Horne <brentonho...@ymail.com> wrote: > > Hi, > > I have been using the JSmol extension for MediaWiki and I'd like to know > what script argument I need in order for hydrogens to be added to a > fetched PDB file. But as I can't run commands for this extension before > the PDB is fetched (e.g., I'd use set pdbAddHydrogens TRUE if I could > run commands before the PDB was loaded) because I'm using <jmolPdb> tags > I'm left asking which commands I can run after fetching the PDB file > that will add hydrogens to the ligands and solvent. > > Thanks for your time, > Brenton > > ------------------------------------------------------------------------------ > BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT > Develop your own process in accordance with the BPMN 2 standard > Learn Process modeling best practices with Bonita BPM through live exercises > http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_ > source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF > _______________________________________________ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users ------------------------------------------------------------------------------ BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT Develop your own process in accordance with the BPMN 2 standard Learn Process modeling best practices with Bonita BPM through live exercises http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_ source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
