Since the goal is to show the interaction between atoms that are contained in two different models, the command to select two atoms in the same model doesn't work.
I loaded the biological assembly; selected all models, and then tried to show interactions between models. Although we have a workaround for creating physical models of the proteins, I haven't found a way to display these types of interactions on the screen for educational purposes. Margaret From: Angel Herráez [mailto:angel.herr...@uah.es] Sent: Friday, September 25, 2015 5:19 PM To: Franzen, Dr. Margaret; jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] connecting atoms in two different models of a pdb file On 25 Sep 2015 at 20:15, Franzen, Dr. Margaret wrote: > I am using Jmol Jmol 14.3.16_2015.08.11 (2015-08-11 16:13) Wow! It seems that "select" is not recognized, neither in my version 14.3.16_2015.09.15 $ select atomno=3 ERROR en guión: no se reconoce la instrucción ---- <<<<select << { atomno = 3 } Now THAT IS a bug, with 6 legs :-D But no freezing for me. Margaret, try with another version. e.g. with 14.2.13 it works: load =1hho.pdb select atomno=2193 or atomno=299; connect strut; strut 0.5; color strut green // 2 atoms selected select [LYS]40:A.NZ/1 or [HIS]146:B.OXT/2 // 1 atom selected - Where is the other? Wrong ID? // Ah! There's only one model: select [LYS]40:A.NZ/1 or [HIS]146:B.OXT/1 // works
------------------------------------------------------------------------------
_______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
