I think the "set smallMoleculeMaxAtoms" will be implemented deep inside 
Jmol, not easy to substitute.

> Isn't this initial/default script applied only after the applet is 
> loaded? 

Yes, I think you're right. So you are worried about the time it takes for the 
model to load.

 
> If the number of atoms exceeds this value the default rendering is 
> changed to "spacefill 0; wireframe 1;".
> But I would either need the opposite or even better a completely 
> disabled default rendering.

By "deactivate" or "disabled", what do you mean? No rendering at all? 
I would not expect "wireframe 1" to be very time consuming, compared to the 
actual reading and processing of all atom information during model load. 
Defining secondary structure and so setting cartoons is, that's the reason for 
the smallMoleculeMaxAtoms threshold.

And what would "the opposite" be? Sorry I'm not getting the specifics you are 
aiming at.

Is it proteins you are working with? Have you investigated about suppressing 
secondary structure calculation maybe? That could take a time.



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