What about just using:

load =5cl3
load append =5cle
compare {1.1} {2.1} atoms {*.P and conformation=1} rotate translate


On Sat, Dec 5, 2015 at 12:52 PM, Robert Hanson <hans...@stolaf.edu> wrote:

> Eric, you  have created an invalid PDB file, I think.
> ​
>



-- 
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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