Ashok,
I see 2 sources of problem in your code:
1) You cannot call compareSmiles() before the Jmol Object has finished being
created
2) Where do you expect to see the output of compareSmiles() ?
This, for example, works for me in the page (no need for the console):
<script type="text/javascript">
function go1() {
document.getElementById('result').innerHTML =
compareSmiles('CC1=CC2=C(C=C1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)
O)O)O',
'N(C(NC1=O)=O)=C(C1=NC2C=C3C)N(C=2C=C3C)C[C@H]([C@@H](O)[C@H
](CO)O)O');
}
function go2() {
document.getElementById('result').innerHTML =
compSmiles('CC1=CC2=C(C=C1C)N(C3=NC(=O)NC(=O)C3=N2)CC(C(C(CO)O)
O)O',
'N(C(NC1=O)=O)=C(C1=NC2C=C3C)N(C=2C=C3C)C[C@H]([C@@H](O)[C@H
](CO)O)O');
}
</script>
<body>
<input type="button" value="go! 1" onClick="go1()">
<input type="button" value="go! 2" onClick="go2()">
<div id="result"></div>
</body>
If you want to work with the Jmol console then you should run the functons in
JmolScript, not in Javascript.
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