Hi Ashok 

> Is it possible to combine Jmol script and PDB file into a single file and 
> load it into JSmol? 

It is, indeed
http://wiki.jmol.org/index.php/File_formats/Scripting#Script_inline_within_a_
molecular_coordinates_file

or you prepare everything in the Jmol application and then export to PNGJ, 
which will contain the pdf file data and the state script

write PNGJ
write JMOL
write ZIPALL




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