I considered it a bug.
Jmol.___JmolVersion="14.5.3_2016.02.28"
bug fix: cyclic peptides do not complete loop for cartoons, backbone, etc.
(1SFI)
* Download Jmol-14.4.3_2016.02.28-binary.zip (60.9 MB)
<https://sourceforge.net/projects/jmol/files/latest/download?source=files>*
On Tue, Feb 16, 2016 at 4:57 PM, Angel Herráez <angel.herr...@uah.es> wrote:
> Eric,
>
> I guess the algorithm for trace etc expects always a sequential order and
> not
> a cyclic one.
>
> I suppose you could create a new Calpha (or a whole residue) that overlaps
> res#1, assign it res#19 and maybe trick Jmol in that way to draw the trace
>
>
> On 16 Feb 2016 at 17:18, Eric Martz wrote:
>
> > 1hvz is a cyclic 18 amino acid peptide with a peptide bond between
> > residues 1 and 18. JSmol shows a break in the cartoon/trace/backbone
> > between 1 and 18, but in wireframe, shows the peptide bond. Is the break
> > in cartoon/trace/backbone a bug or a feature? -Eric
> >
> >
> >
> >
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--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Department of Chemistry
St. Olaf College
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http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
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