Hello Eugene
You should better use the jmol-users list for this kind of questions. I am
moving the discussion there.
> I'm performing animating vibrations in crystal files in XYZ format which
> is simple and well documented. But every time I'm loading the file I
> should provide unit cell vectors by activating JMOL console in new
> rising window and running the command like:
>
> load "" {1 1 1} UNITCELL
> [4.2695378,0.0000000,0.0000000,2.1347689,3.6975282,0.0000000,0.0000000,0.0000000,8.0000006]
>
> Truly saying that is not very comfortable. Is it possible to ask JMOL
> automatically run the JMOL command provided in XYZ file. Maybe some
> specific word in the end of XYZ file like:
Yes, that is possible. The magic word is "jmolscript:" and in the case of xyz
files it must go in the second line. For details, please see
http://wiki.jmol.org/index.php/File_formats/Scripting#Script_inline_within_a_
molecular_coordinates_file
> The other question related to JMOL interface. Is it possible to activate
> console in the same window there the menu and structure showed (i.e.
> single window mode). I'm always use console and switch between main
> window and console makes me crazy :)
I do not think there is a way to do that. The console uses a separate window,
but you can resize them so both are visible side by side (and their position
will be remembered for next time you start Jmol)
You could set-up a web page that would contain a JSmol panel and a
command line panel.
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