---------- Forwarded message ----------
From: sameer <sam...@ebi.ac.uk>
Date: Fri, Jul 8, 2016 at 10:01 AM
Subject: Re: [Jmol-users] incomplete cartoons in Calpha-only files
To: Robert Hanson <hans...@stolaf.edu>
Cc: jmol-users@lists.sourceforge.net
Thanks Bob for pointing this out. Will get this fixed asap.
Kind regards,
Sameer
On 2016-07-08 15:55, Robert Hanson wrote:
> [forwarding this to EBI....]
>
> I'm going to _suggest_ that EBI is producing invalid files:
>
>
> http://mmcif.wwpdb.org/dictionaries/mmcif_std.dic/Items/_struct_sheet_range.sheet_id.html
> [1]
>
> Item name_struct_sheet_range.sheet_idCategory namestruct_sheet_range
> [2]ATTRIBUTE NAMESHEET_IDREQUIRED IN PDB ENTRIESYES
>
> And yet, we have:
>
> loop_
> _struct_sheet_range.conf_type_id
> _struct_sheet_range.id [3]
> _struct_sheet_range.beg_label_comp_id
> _struct_sheet_range.beg_label_asym_id
> _struct_sheet_range.beg_label_seq_id
> _struct_sheet_range.pdbx_beg_PDB_ins_code
> _struct_sheet_range.end_label_comp_id
> _struct_sheet_range.end_label_asym_id
> _struct_sheet_range.end_label_seq_id
> _struct_sheet_range.pdbx_end_PDB_ins_code
> _struct_sheet_range.symmetry
> _struct_sheet_range.beg_auth_comp_id
> _struct_sheet_range.beg_auth_asym_id
> _struct_sheet_range.beg_auth_seq_id
> _struct_sheet_range.end_auth_comp_id
> _struct_sheet_range.end_auth_asym_id
> _struct_sheet_range.end_auth_seq_id
>
>
> Bob
>
>
> Links:
> ------
> [1]
>
> http://mmcif.wwpdb.org/dictionaries/mmcif_std.dic/Items/_struct_sheet_range.sheet_id.html
> [2]
>
> http://mmcif.wwpdb.org/dictionaries/mmcif_std.dic/Categories/struct_sheet_range.html
> [3] http://struct_sheet_range.id
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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