Hi Eric I agree it's a bug. I would expect both models to be saved, and the doc says "Only the currently selected atoms are saved." If you save to SDF it works as expected.
The fact that the file has MODEL ENDMDL means that Jmol is indeed intending to save both. So for proteins, you could instead use write test.jmol which works fine. Of course, that's a binary file (may be an issue if you want to work with local webpages). ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports.http://sdm.link/zohodev2dev _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users