I can confirm what Kuntal was reporting, and also with a different model
So there is a bug
in PovRay export from Jmol 14.6.4_2016.10.21
Atoms are rendered much bigger. Bonds seem unaffected.
See example:
PNGJ made by Jmol (alanine from NCI):
http://biomodel.uah.es/angel/Jmol/Ala.Jmol.png
PNG produced after PovRay:
http://biomodel.uah.es/angel/Jmol/Ala.pov.png
intermediate files:
http://biomodel.uah.es/angel/Jmol/Ala.pov
http://biomodel.uah.es/angel/Jmol/Ala.pov.ini
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