You are doing it the way you do it. Jmol has to be pointed to a specific
file within a ZIP file, not just the file itself. You can access the
directory of the ZIP file using:
show file "xxxx.zip"
or get that list into an array variable using:
x = load("xxxx.zip").lines
or load the actual file using
x = load("xxxx.zip",true)
For example:
*$ x = load("tw1.zip")$ print x*1.pdb
2.pdb
3.pdb
state.spt
JmolManifest.txt
Jmol_version_14.0.13__2014-04-01_23.19
*$ print x.lines[1]*1.pdb
*$ x = load("tw1.zip", true)$ print x.keys*$_BINARY_$
1.pdb
2.pdb
3.pdb
JmolManifest.txt
Jmol_version_14.0.13__2014-04-01_23.19
_IMAGE_
_LEN_
state.spt
*$ print x["1.pdb"]*ATOM 1 N THR A 5 20.489 36.271 -17.176
1.00 48.85 N
ATOM 2 CA THR A 5 19.377 35.347 -16.804 1.00
48.50 C
ATOM 3 C THR A 5 19.861 34.234 -15.880 1.00
47.91 C
ATOM 4 O THR A 5 20.947 34.323 -15.304 1
...
Bob
On Sun, Dec 4, 2016 at 11:18 PM, Douglas Juers <[email protected]> wrote:
> Hello,
>
> I have been trying to load a zip file containing pdb files. The zip file
> was created with WinZip.:
>
> $ load twofiles.zip
> script ERROR: java.lang.NullPointerException
> ----
> load <<<<“twofiles.zip"
>
> I can, however, load either file independently:
>
> $ load twofiles.zip|3rbo.pdb
> LIGASE 29-MAR-11 3RBO
> CRYSTAL STRUCTURE OF N10-FORMYLTETRAHYDROFOLATE SYNTHETASE WIT
> AND FORMYLPHOSPHATE
> found biomolecule 1: A, B
> 3RBO
>
> $ load twofiles.zip|3t2h.pdb
> HYDROLASE 22-JUL-11 3T2H
> TETRAGONAL THERMOLYSIN IN THE PRESENCE OF TMAO
> found biomolecule 1: E
> 3T2H
>
> I am using jmol 14.6.4_2016.11.05. The error occurs on both Mac and
> Windows, and also in version 13. Version 12 or 11, however, read the zip
> file fine, loading both molecules.
>
> Any help would be much appreciated!
>
> -Doug
>
> --------------------------
> Douglas Juers
> Associate Professor
> Physics Department
> Program in BBMB
> Whitman College
> Walla Walla, WA 99362
> Phone: 509-527-5229 <%28509%29%20527-5229> FAX: 509-527-5904
> <%28509%29%20527-5904>
> Web: http://www.whitman.edu/~juersdh/
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> ------------------------------------------------------------
> ------------------
>
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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