Sorry there was a pasting issue (ass should have been { ) . I've pasted a
better test case below where residues GLY3 and ARG9 should be colored pink.
Replacing color with colorscheme takes care of the error - Thank you.
Assuming I understand the expected behavior of the command, jmol is not
assigning the specified colors to the correct residues. ARG9 is red instead
of pink.
load 3AB6.pdb
set usercolorscheme {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,0,255.0}
{255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,0,255.0} {255.0,127.5,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,127.5,0.0}
{255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,127.5,0.0} {255.0,127.5,0.0}
{255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,127.5,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {0.0,255.0,255.0} {0.0,255.0,255.0}
{255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0}
{0.0,255.0,255.0} {0.0,255.0,255.0} {0.0,255.0,255.0} {0.0,255.0,255.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {0.0,255.0,255.0}
{0.0,255.0,255.0} {0.0,255.0,255.0} {255.0,255.0,0.0} {255.0,127.5,0.0}
{255.0,255.0,0.0} {0.0,255.0,255.0} {0.0,255.0,255.0} {0.0,255.0,255.0}
{0.0,255.0,255.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {0.0,255.0,255.0} {0.0,255.0,255.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,127.5,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,255.0,0.0} {255.0,255.0,0.0}
{255.0,255.0,0.0} {255.0,127.5,0.0} {255.0,127.5,0.0} {0.0,255.0,255.0}
{255.0,127.5,0.0} {255.0,127.5,0.0} {0.0,255.0,255.0}
isosurface select(*:A) ignore { ( hoh ) } molecular colorscheme 'user'
map property resno; color isosurface range 1 122
On Thu, Jan 12, 2017 at 7:51 PM, Robert Hanson <hans...@stolaf.edu> wrote:
> OK, I found it. An easy fix. will be in 14.8.1 to allow isosurface
> color "user" ....
>
>
> On Thu, Jan 12, 2017 at 6:42 PM, Robert Hanson <hans...@stolaf.edu> wrote:
>
>> The simple fix is to replace "color" with "colorscheme". I'm looking into
>> why that is the case.
>>
>>
>>
>>
>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
>
> ------------------------------------------------------------
> ------------------
> Developer Access Program for Intel Xeon Phi Processors
> Access to Intel Xeon Phi processor-based developer platforms.
> With one year of Intel Parallel Studio XE.
> Training and support from Colfax.
> Order your platform today. http://sdm.link/xeonphi
> _______________________________________________
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
------------------------------------------------------------------------------
Developer Access Program for Intel Xeon Phi Processors
Access to Intel Xeon Phi processor-based developer platforms.
With one year of Intel Parallel Studio XE.
Training and support from Colfax.
Order your platform today. http://sdm.link/xeonphi
_______________________________________________
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
