[I'm moving this to the jmol-users list] Hi Jeff
I foresee no problem in your scripts. My advice is that you right-click and open the Console, then paste there your scripted commands one at a time and see which one gives the error or fails to work. On 28 Apr 2017 at 15:15, Jeff Sims wrote: > I´m trying to diagnose scripts written a few years ago that are no longer > working in the latest version of JSmol. > The same scripts work correctly in an older version of JSmol: ver. 14.2.4 > (2014-08-03). > After updating JSmol, there is no error in the JSmol console, just a blank > JSmol canvas (no atoms appear). > > I suspect that it´s syntax related to `select´? because nothing is being > selected for color or style, but not sure. > > Here are a few excerpts: (I´ll just include an example of each type of call). > Does any of this look problematic or need fixes? > I can post the full scripts if helpful. > > model 1 > rotate z -108 > rotate y 130 > rotate z 32 > zoom 100 > restrict not :a and not solvent > > select 147-157 and :a > define switch1a selected > > select switch1a or switch2a or switch3a > define allswitcha selected > > select :i and (177,179,181,192,198,199,200,202,205,211) > #numbers are less by 1 than those in the Nature 379 article > define ihb selected > #alpha subunit residues hbonding with beta > > elect (switch1b and backbone) and not (173-176) #these > sw1b residues interact w/beta > select selected or (177,179,181) and :i > define subset1b selected > > select :a and (172,173,174,176,179,185) or (switch2a and backbone) > define subset2a selected > > select :a > color [xFFAD00] #orange > > select gtp > color [x00C000] #guanine green > > select gdp > color [xFF0000] > > select :i or :b or :g or :d > spacefill on > select atomno=644 and :i > label "\u03b1" > ------------------------------------------------------------------------------ > Check out the vibrant tech community on one of the world's most > engaging tech sites, Slashdot.org! http://sdm.link/slashdot > _______________________________________________ > Jmol-developers mailing list > jmol-develop...@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-developers --- El software de antivirus Avast ha analizado este correo electrónico en busca de virus. https://www.avast.com/antivirus ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot _______________________________________________ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
