Hi! I got an error during sparse Cholesky computation related Mixed Models. So I ran test for MixedModels and I got the same error as below: /usr/bin/julia: symbol lookup error: /usr/bin/../lib/x86_64-linux-gnu/julia/libcholmod.so: undefined symbol: dpotrf_
I found very similar issue for JuliaBox: https://github.com/JuliaLang/JuliaBox/issues/221 I tried same codes in the issue and got the same error: julia> B1 = sprandn(100,100,0.1); julia> B2 = speye(100); julia> x = kron(B2,B1)\randn(100*100); julia: symbol lookup error: /usr/bin/../lib/x86_64-linux-gnu/julia/libcholmod.so: undefined symbol: dpotrf_ There has been no problem, but it comes up suddenly. I installed Julia from the official PPA and also already tried to remove Julia completely, but the problem persisted. If anyone can help solving this problem, I will appreciate!! Yonghee Lee -------------------------------------------- error message and system info ----------------------------------------- julia> Base.Pkg.test("MixedModels") INFO: Testing MixedModels PASSED: plsonescalar.jl PASSED: plsonevector.jl PASSED: plstwoscalar.jl PASSED: plstwovector.jl PASSED: plsdiagnested.jl /usr/bin/julia: symbol lookup error: /usr/bin/../lib/x86_64-linux-gnu/julia/libcholmod.so: undefined symbol: dpotrf_ ======================================[ ERROR: MixedModels ]====================================== failed process: Process(`/usr/bin/julia /home/ylee19067/.julia/v0.3/MixedModels/test/runtests.jl`, ProcessExited(127)) [127] ================================================================================================== INFO: No packages to install, update or remove ERROR: MixedModels had test errors in error at error.jl:21 in test at pkg/entry.jl:718 in anonymous at pkg/dir.jl:28 in cd at ./file.jl:20 in cd at pkg/dir.jl:28 in test at pkg.jl:67 julia> versioninfo(true) Julia Version 0.3.11 Commit 483dbf5 (2015-07-27 06:18 UTC) Platform Info: System: Linux (x86_64-linux-gnu) CPU: Intel(R) Core(TM) i7-4770 CPU @ 3.40GHz WORD_SIZE: 64 Ubuntu 14.04.3 LTS uname: Linux 3.13.0-62-generic #102-Ubuntu SMP Tue Aug 11 14:29:36 UTC 2015 x86_64 x86_64 Memory: 31.36642074584961 GB (27138.046875 MB free) BLAS: libopenblas (NO_LAPACK NO_LAPACKE DYNAMIC_ARCH NO_AFFINITY Haswell) LAPACK: liblapack.so.3 LIBM: libopenlibm LLVM: libLLVM-3.3 Environment: TERM = xterm XDG_SESSION_PATH = /org/freedesktop/DisplayManager/Session2 XDG_SEAT_PATH = /org/freedesktop/DisplayManager/Seat0 DEFAULTS_PATH = /usr/share/gconf/ubuntu.default.path PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games MANDATORY_PATH = /usr/share/gconf/ubuntu.mandatory.path NODE_PATH = /usr/lib/nodejs:/usr/lib/node_modules:/usr/share/javascript COMPIZ_BIN_PATH = /usr/bin/ $ wajig show julia Package: julia State: installed Automatically installed: no Version: 0.3.11-trusty1 Priority: extra Section: science Maintainer: Debian Julia Team <[email protected]> Architecture: amd64 Uncompressed Size: 67.1 M Depends: libc6 (>= 2.17), libdouble-conversion1, libgcc1 (>= 1:4.1.1), libgfortran3 (>= 4.6), liblapack3 | liblapack.so.3, libopenblas-base, libstdc++6 (>= 4.6), zlib1g (>= 1:1.2.0), liblapack3 | libatlas3-base, libpcre3 (>= 8.31), libfftw3-3, libcholmod1.7.1 | libcholmod2.1.2, libumfpack5.4.0 | libumfpack5.6.2, libgmp10 (>= 5.1.3), libarpack2, librmath-julia-dev, libmpfr4, git PreDepends: multiarch-support Suggests: ess (>= 12.09-1~), julia-doc Conflicts: julia
