I don't know enough about Gentoo to be sure, but I suspect the "lib64" there is referring to libblas being compiled as a 64-bit binary. Using 64 bit integers in libblas is a bit unconventional and I'd be surprised if Gentoo were doing that by default. The relevant part of the ebuild is in the src_configure() step where they populate Make.user. If you add USE_BLAS64=0 to the list of flags there I suspect it'll help.
On Tuesday, September 8, 2015 at 3:39:14 AM UTC-7, Phil_n wrote: > > The only USE flag used, when installing Julia is emacs, from what I can > see. > > # equery uses julia > [ Legend : U - final flag setting for installation] > [ : I - package is installed with flag ] > [ Colors : set, unset ] > * Found these USE flags for dev-lang/julia-0.3.0: > U I > - - emacs : Add support for GNU Emacs > > I believe that BLAS is built with 64 bit support (but I am not entirely > sure): > > # eselect blas show > lib64: reference > > The complete code of the e-build is: > > > # Copyright 1999-2014 Gentoo Foundation > # Distributed under the terms of the GNU General Public License v2 > # $Id$ > > EAPI=5 > > RESTRICT="test" > > inherit elisp-common eutils multilib pax-utils toolchain-funcs > > PDSFMT=dSFMT-src-2.2 > > DESCRIPTION="High-performance programming language for technical computing" > HOMEPAGE="http://julialang.org/"; > SRC_URI=" > https://github.com/JuliaLang/${PN}/archive/v${PV}.tar.gz -> > ${P}.tar.gz > http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/${PDSFMT}.tar.gz > https://dev.gentoo.org/~patrick/libuv-${P}.tar.bz2 > https://dev.gentoo.org/~patrick/rmath-0_p20140821.tar.bz2 > > http://www.public-software-group.org/pub/projects/utf8proc/v1.1.6/utf8proc-v1.1.6.tar.gz > " > > LICENSE="MIT" > SLOT="0" > KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" > IUSE="emacs" > > RDEPEND=" > dev-lang/R:0= > dev-libs/double-conversion:0= > dev-libs/gmp:0= > dev-libs/libpcre:3= > dev-libs/mpfr:0= > dev-libs/openspecfun > sci-libs/arpack:0= > sci-libs/camd:0= > sci-libs/cholmod:0= > sci-libs/fftw:3.0= > sci-libs/openlibm:0= > sci-libs/spqr:0= > sci-libs/umfpack:0= > sci-mathematics/glpk:0= > =sys-devel/llvm-3.4* > >=sys-libs/libunwind-1.1:7= > sys-libs/readline:0= > sys-libs/zlib:0= > virtual/blas > virtual/lapack > emacs? ( app-emacs/ess )" > > DEPEND="${RDEPEND} > dev-util/patchelf > virtual/pkgconfig" > > src_prepare() { > ln -s "${DISTDIR}"/${PDSFMT}.tar.gz deps/dsfmt-2.2.tar.gz || die > ln -s "${DISTDIR}"/utf8proc-v1.1.6.tar.gz deps/utf8proc-v1.1.6.tar.gz > || die > cp -ar "${WORKDIR}"/Rmath deps/ || die > rmdir deps/libuv && ln -s "${WORKDIR}"/libuv deps/libuv > # no fetching in ebuild > # /usr/include/suitesparse is for debian only > # respect prefix, flags > sed -i \ > -e 's|$(JLDOWNLOAD)|${EPREFIX}/bin/true|' \ > -e 's|git submodule|${EPREFIX}/bin/true|g' \ > -e 's|^\(SUITESPARSE_INC\s*=\).*||g' \ > -e "s|-O3|${CFLAGS}|g" \ > -e 's|/usr/bin/||g' \ > -e "s|/usr/include|${EPREFIX%/}/usr/include|g" \ > deps/Makefile || die > > sed -i \ > -e "s|\(JULIA_EXECUTABLE = \)\(\$(JULIAHOME)/julia\)|\1 > LD_LIBRARY_PATH=\$(BUILD)/$(get_libdir) \2|" \ > -e "s|-O3|${CFLAGS}|g" \ > -e "s|LIBDIR = lib|LIBDIR = $(get_libdir)|" \ > -e "s|/usr/lib|${EPREFIX}/usr/$(get_libdir)|" \ > -e "s|/usr/include|${EPREFIX}/usr/include|" \ > -e "s|\$(BUILD)/lib|\$(BUILD)/$(get_libdir)|" \ > -e "s|^JULIA_COMMIT = .*|JULIA_COMMIT = v${PV}|" \ > Make.inc || die > > sed -i \ > -e "s|,lib)|,$(get_libdir))|g" \ > -e "s|\$(BUILD)/lib|\$(BUILD)/$(get_libdir)|g" \ > Makefile || die > > sed -i \ > -e "s|ar -rcs|$(tc-getAR) -rcs|g" \ > src/Makefile || die > > } > > src_configure() { > # libuv is an incompatible fork from upstream, so don't use system one > cat <<-EOF > Make.user > USE_LLVM_SHLIB=1 > USE_SYSTEM_ARPACK=1 > USE_SYSTEM_BLAS=1 > USE_SYSTEM_FFTW=1 > USE_SYSTEM_GMP=1 > USE_SYSTEM_GRISU=1 > USE_SYSTEM_LAPACK=1 > USE_SYSTEM_LIBM=1 > USE_SYSTEM_LIBUNWIND=1 > USE_SYSTEM_LIBUV=0 > USE_SYSTEM_LLVM=1 > USE_SYSTEM_MPFR=1 > USE_SYSTEM_OPENLIBM=1 > USE_SYSTEM_OPENSPECFUN=1 > USE_SYSTEM_PCRE=1 > USE_SYSTEM_READLINE=1 > USE_SYSTEM_RMATH=1 > USE_SYSTEM_SUITESPARSE=1 > USE_SYSTEM_ZLIB=1 > VERBOSE=1 > EOF > } > > src_compile() { > # Not parallel-safe, #514882 > emake -j1 cleanall > if [[ $(get_libdir) != lib ]]; then > mkdir -p usr/$(get_libdir) || die > ln -s $(get_libdir) usr/lib || die > fi > emake -j1 julia-release prefix="/usr" DESTDIR="${D}" > pax-mark m $(file usr/bin/julia-* | awk -F : '/ELF/ {print $1}') > emake > use emacs && elisp-compile contrib/julia-mode.el > } > > src_test() { > emake test > } > > src_install() { > emake install prefix="/usr" DESTDIR="${D}" > cat > 99julia <<-EOF > LDPATH=${EROOT%/}/usr/$(get_libdir)/julia > EOF > doenvd 99julia > > if use emacs; then > elisp-install "${PN}" contrib/julia-mode.el > elisp-site-file-install "${FILESDIR}"/63julia-gentoo.el > fi > dodoc README.md > } > > pkg_postinst() { > use emacs && elisp-site-regen > } > > pkg_postrm() { > use emacs && elisp-site-regen > } > > > Here > > On Monday, September 7, 2015 at 10:51:41 AM UTC+2, Tony Kelman wrote: >> >> 0.3.0 is a year out of date, you should update to 0.3.11. Depending which >> BLAS implementation is being used there, you probably need to add >> USE_BLAS64=0 when you build. Where is the actual make command getting run >> there, and what flags are being used? On master when you set >> USE_SYSTEM_BLAS we now default to USE_BLAS64=0 for non-MKL BLAS >> implementations, but looks like I didn't backport that to release-0.3 yet. >> >> >> On Monday, September 7, 2015 at 1:36:02 AM UTC-7, Phil_n wrote: >>> >>> julia> versioninfo() >>> Julia Version 0.3.0 >>> Platform Info: >>> System: Linux (x86_64-pc-linux-gnu) >>> CPU: Intel(R) Core(TM) i7-4550U CPU @ >>> 1.50GHz >>> WORD_SIZE: 64 >>> BLAS: libblas >>> LAPACK: liblapack >>> LIBM: libm >>> LLVM: libLLVM-3.3 >>> >>> I may add that I run python 2.7 >>> >>> I built Julia with Gentoos command "emerge julia". The package manager >>> is Portage. Portage use e-build files that specify the build. I enclose the >>> e-build contents for Julia 0.3.0 >>> >>> DEFINED_PHASES=compile configure install postinst postrm prepare test >>> DEPEND=dev-lang/R:0= dev-libs/double-conversion:0= dev-libs/gmp:0= >>> dev-libs/libpcre:3= dev-libs/mpfr:0= dev-libs/openspecfun >>> sci-libs/arpack:0= sci-libs/camd:0= sci-libs/cholmod:0= sci-libs/fftw:3.0= >>> sci-libs/openlibm:0= sci-libs/spqr:0= sci-libs/umfpack:0= >>> sci-mathematics/glpk:0= =sys-devel/llvm-3.4* >=sys-libs/libunwind-1.1:7= >>> sys-libs/readline:0= sys-libs/zlib:0= virtual/blas virtual/lapack emacs? ( >>> app-emacs/ess ) dev-util/patchelf virtual/pkgconfig >>> DESCRIPTION=High-performance programming language for technical computing >>> EAPI=5 >>> HOMEPAGE=http://julialang.org/ >>> IUSE=emacs >>> KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux >>> LICENSE=MIT >>> RDEPEND=dev-lang/R:0= dev-libs/double-conversion:0= dev-libs/gmp:0= >>> dev-libs/libpcre:3= dev-libs/mpfr:0= dev-libs/openspecfun >>> sci-libs/arpack:0= sci-libs/camd:0= sci-libs/cholmod:0= sci-libs/fftw:3.0= >>> sci-libs/openlibm:0= sci-libs/spqr:0= sci-libs/umfpack:0= >>> sci-mathematics/glpk:0= =sys-devel/llvm-3.4* >=sys-libs/libunwind-1.1:7= >>> sys-libs/readline:0= sys-libs/zlib:0= virtual/blas virtual/lapack emacs? ( >>> app-emacs/ess ) >>> RESTRICT=test >>> SLOT=0 >>> SRC_URI=https://github.com/JuliaLang/julia/archive/v0.3.0.tar.gz -> >>> julia-0.3.0.tar.gz >>> http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/SFMT/dSFMT-src-2.2.tar.gz >>> https://dev.gentoo.org/~patrick/libuv-julia-0.3.0.tar.bz2 >>> https://dev.gentoo.org/~patrick/rmath-0_p20140821.tar.bz2 >>> http://www.public-software-group.org/pub/projects/utf8proc/v1.1.6/utf8proc-v1.1.6.tar.gz >>> _eclasses_=elisp-common 73c48c11ad6a6494eda0d0cca848c8fa eutils >>> 351a78113be5b393c09a2c948701ad36 multilib >>> df4e4d5cfd3d137d0c248e1991c0e4d6 pax-utils >>> 4f1280c0d4dcd8340f731827007c0a53 toolchain-funcs >>> 4b8d3388c0a6e798504e20ba30b49361 >>> _md5_=0bcd509adf676993353b822904b3e9dd >>> >>> When running the install script (the e-build) I got the message that a >>> few keywords needed to be set, as follows >>> >>> # required by dev-lang/julia-0.3.0::gentoo >>> # required by julia (argument) >>> =dev-libs/openspecfun-0.4-r1 ~amd64 >>> # required by dev-lang/julia-0.3.0::gentoo >>> # required by julia (argument) >>> =sys-devel/llvm-3.4.2 ~amd64 >>> # required by julia (argument) >>> =dev-lang/julia-0.3.0 ~amd64 >>> # required by dev-lang/julia-0.3.0::gentoo >>> # required by julia (argument) >>> =sci-libs/openlibm-0.3 ~amd64 >>> # required by dev-lang/julia-0.3.0::gentoo >>> # required by julia (argument) >>> =dev-libs/double-conversion-2.0.1 ~amd64 >>> # required by dev-lang/julia-0.3.0::gentoo >>> # required by julia (argument) >>> =sci-libs/spqr-1.3.1 ~amd64 >>> >>> >>> On Monday, September 7, 2015 at 7:57:34 AM UTC+2, Tony Kelman wrote: >>>> >>>> What does versioninfo() say? Did you build Julia from a git checkout, >>>> or is there some port build recipe for it in Gentoo? >>>> >>>> >>>> On Sunday, September 6, 2015 at 2:37:02 PM UTC-7, Phil_n wrote: >>>>> >>>>> I am getting an error when i try to load PyPlot for makeing a plot >>>>> >>>>> julia> using PyPlot >>>>> ERROR: LAPACKException(140544214827008) >>>>> in include at /usr/bin/../lib/julia/sys.so >>>>> in include_from_node1 at /usr/bin/../lib/julia/sys.so >>>>> in include at /usr/bin/../lib/julia/sys.so >>>>> in include_from_node1 at /usr/bin/../lib/julia/sys.so >>>>> in include at /usr/bin/../lib/julia/sys.so >>>>> in include_from_node1 at /usr/bin/../lib/julia/sys.so >>>>> in include at /usr/bin/../lib/julia/sys.so >>>>> in include_from_node1 at /usr/bin/../lib/julia/sys.so >>>>> while loading /home/philip/.julia/v0.3/Colors/src/conversions.jl, in >>>>> expression starting on line 717 >>>>> while loading /home/philip/.julia/v0.3/Colors/src/Colors.jl, in >>>>> expression starting on line 31 >>>>> while loading /home/philip/.julia/v0.3/PyPlot/src/colormaps.jl, in >>>>> expression starting on line 4 >>>>> while loading /home/philip/.julia/v0.3/PyPlot/src/PyPlot.jl, in >>>>> expression starting on line 489 >>>>> >>>>> Can anyone guide me to the root casue of this problem, I would be >>>>> greatful >>>>> >>>>> I am running Gentoo Linux on a Lenovo X1 Carbon laptop >>>>> >>>>> Tnx /Phil >>>>> >>>>
