Oops! Thanks! I put __precompile__() before the module definitions in both Foo.jl and Bar.jl. The problem is still there though.
- Rohit On Friday, 21 October 2016 17:23:16 UTC-4, Michele Zaffalon wrote: > > I am not sure if this is the reason, but the manual ( > http://docs.julialang.org/en/release-0.5/manual/modules/) says you should > put _precompile_() before the module starts. > > On Fri, Oct 21, 2016 at 10:56 PM, Rohit Varkey Thankachan < > rohit...@gmail.com <javascript:>> wrote: > >> Hi, >> >> I've been trying to use julia on one of my university machines and having >> precompilation issues. The machine runs Linux x84_46 and I'm using the 0.5 >> generic linux binary. >> >> I was trying to use JLD.jl and kept getting precompilation failures for >> HFD5. On trying to do `using HDF5` in the REPL, it was giving me the same >> error for Compat.jl. By running `using <module>` for all modules for which >> precompilation was failing when trying to use JLD(HDF5->(Compat, Blosc), >> FileIO) I got them all precompiled successfully. However JLD also needed >> LegacyStrings to be precompiled, which does not have precompilation enabled >> and has to be precompiled from another module. At which point I was stuck >> and I decided to just go with `julia --compilecache=no`. >> >> julia> using JLD >> INFO: Precompiling module JLD. >> ERROR: LoadError: LoadError: Failed to precompile LegacyStrings to >> /nethome/rvt7/.julia/lib/v0.5/LegacyStrings.ji. >> in compilecache(::String) at ./loading.jl:593 >> in require(::Symbol) at ./loading.jl:393 >> in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times) >> in macro expansion; at ./none:2 [inlined] >> in anonymous at ./<missing>:? >> in eval(::Module, ::Any) at ./boot.jl:234 >> in process_options(::Base.JLOptions) at ./client.jl:239 >> in _start() at ./client.jl:318 >> while loading /nethome/rvt7/.julia/v0.5/JLD/src/jld_types.jl, in >> expression starting on line 1 >> while loading /nethome/rvt7/.julia/v0.5/JLD/src/JLD.jl, in expression >> starting on line 130 >> ERROR: Failed to precompile JLD to /nethome/rvt7/.julia/lib/v0.5/JLD.ji. >> in compilecache(::String) at ./loading.jl:593 >> in require(::Symbol) at ./loading.jl:422 >> >> julia> using LegacyStrings >> WARNING: could not import Base.lastidx into LegacyStrings >> WARNING: using LegacyStrings.utf8 in module Main conflicts with an >> existing identifier. >> WARNING: using LegacyStrings.ascii in module Main conflicts with an >> existing identifier. >> >> julia> using JLD >> INFO: Precompiling module JLD. >> WARNING: Module LegacyStrings with uuid 25677385416258011 is missing from >> the cache. >> This may mean module LegacyStrings does not support precompilation but is >> imported by a module that does. >> ERROR: LoadError: LoadError: Declaring __precompile__(false) is not >> allowed in files that are being precompiled. >> in require(::Symbol) at ./loading.jl:385 >> in include_from_node1(::String) at ./loading.jl:488 (repeats 2 times) >> in macro expansion; at ./none:2 [inlined] >> in anonymous at ./<missing>:? >> in eval(::Module, ::Any) at ./boot.jl:234 >> in process_options(::Base.JLOptions) at ./client.jl:239 >> in _start() at ./client.jl:318 >> while loading /nethome/rvt7/.julia/v0.5/JLD/src/jld_types.jl, in >> expression starting on line 1 >> while loading /nethome/rvt7/.julia/v0.5/JLD/src/JLD.jl, in expression >> starting on line 130 >> ERROR: Failed to precompile JLD to /nethome/rvt7/.julia/lib/v0.5/JLD.ji. >> in compilecache(::String) at ./loading.jl:593 >> in require(::Symbol) at ./loading.jl:422 >> >> On a hunch that this was occurring due to a package with precompilation >> enabled trying to use another precompilation enabled package which hadn't >> been precompiled yet, I tried making a minimal example to check this. I >> created 2 packages Foo and Bar, both of which have precompilation enabled. >> >> ~/.julia/v0.5/Foo/Foo.jl: >> module Foo >> >> __precompile__() >> using Bar >> >> import Bar: bar >> >> end >> >> ~/.julia/v0.5/Bar/src/Bar.jl: >> >> module Bar >> >> __precompile__() >> >> export bar >> >> const bar = "foo" >> >> end >> >> Now when I try using Foo, I get a precompilation failed error for Bar. >> Foo does precompile when Bar is already precompiled though! >> >> _ >> _ _ _(_)_ | A fresh approach to technical computing >> (_) | (_) (_) | Documentation: http://docs.julialang.org >> _ _ _| |_ __ _ | Type "?help" for help. >> | | | | | | |/ _` | | >> | | |_| | | | (_| | | Version 0.5.0 (2016-09-19 18:14 UTC) >> _/ |\__'_|_|_|\__'_| | Official http://julialang.org/ release >> |__/ | x86_64-pc-linux-gnu >> >> julia> using Foo >> INFO: Precompiling module Foo. >> ERROR: LoadError: Failed to precompile Bar to >> /nethome/rvt7/.julia/lib/v0.5/Bar.ji. >> in compilecache(::String) at ./loading.jl:593 >> in require(::Symbol) at ./loading.jl:393 >> in include_from_node1(::String) at ./loading.jl:488 >> in macro expansion; at ./none:2 [inlined] >> in anonymous at ./<missing>:? >> in eval(::Module, ::Any) at ./boot.jl:234 >> in process_options(::Base.JLOptions) at ./client.jl:239 >> in _start() at ./client.jl:318 >> while loading /nethome/rvt7/.julia/v0.5/Foo/src/Foo.jl, in expression >> starting on line 4 >> ERROR: Failed to precompile Foo to /nethome/rvt7/.julia/lib/v0.5/Foo.ji. >> in compilecache(::String) at ./loading.jl:593 >> in require(::Symbol) at ./loading.jl:422 >> >> julia> using Bar >> INFO: Precompiling module Bar. >> WARNING: replacing module Bar. >> >> julia> reload("Foo") >> WARNING: replacing module Foo >> INFO: Precompiling module Foo. >> WARNING: replacing module Foo. >> >> julia> versioninfo() >> Julia Version 0.5.0 >> Commit 3c9d753 (2016-09-19 18:14 UTC) >> Platform Info: >> System: Linux (x86_64-pc-linux-gnu) >> CPU: Intel(R) Xeon(R) CPU X5650 @ 2.67GHz >> WORD_SIZE: 64 >> BLAS: libopenblas (USE64BITINT DYNAMIC_ARCH NO_AFFINITY Nehalem) >> LAPACK: libopenblas64_ >> LIBM: libopenlibm >> LLVM: libLLVM-3.7.1 (ORCJIT, westmere) >> >> Any ideas why this might be occurring? >> >> Thanks, >> Rohit >> >> >
