{Factor.FactorMargin()} simply marginalizes non-stated variables in Factor.
On Thursday, November 17, 2016 at 5:27:38 PM UTC-2, Kevin Liu wrote: > > I replaced Factor[:FactorMargin]() with Factor.FactorMargin() back again. > > Still, for FactorOperations.jl on Atom, I get {UndefVarError: Factor not > defined} at the end of each block. > > Factor is defined on Factor.jl, and that file evaluates fine. > > The main file, BN.jl, includes Factor.jl and FactorOperations.jl and > exports Factor, and also evaluates fine. > > On Wednesday, November 16, 2016 at 11:25:24 PM UTC-2, Yichao Yu wrote: >> >> On Wed, Nov 16, 2016 at 7:24 PM, Kevin Liu <kvt...@gmail.com> wrote: >> > Hi Yichao! >> >> In general there's nothing from the code you posted that shows what >> you want to do. >> >> > >> > Here is the function from FactorOperations.jl >> > >> > function FactorDropMargin(A::Factor, Remove_var::Vector{String}) >> > Remove_dims = indexin(Remove_var, A.var) >> > if any(Remove_dims==0) >> > error("Wrong variable!") >> > end >> > >> > Remain_var = symdiff(A.var, Remove_var) >> > Remain_dims = indexin(Remain_var, A.var) >> > >> > Factor[:FactorMargin](A, Remove_var, Remain_var, Remove_dims, >> > Remain_dims) # line 85 >> >> Unless you overloaded getindex on this type (which you should include) >> you are construction a Vector of `Factor` from a symbol and then >> calling it. It's impossible to tell what you actually want to do. >> >> And as I previously mentioned, unless you are using PyCall, the issue >> you linked is totally unrelated to this. >> >> > end >> > >> > runtests.jl: >> > >> > @testset "Multiply and marginalize factor" begin >> > >> > A=Factor(["a", "b"],[3, 2],[0.5, 0.1, 0.3, 0.8, 0, 0.9]) >> > B=Factor(["b", "c"],[2, 2],[0.5, 0.1, 0.7, 0.2]) >> > C = FactorProduct(A, B) >> > FactorDropMargin(C, ["c"]) # line 19 >> > FactorKeepMargin(C, ["b", "a"]) >> > FactorPermute(ans, [2, 1]) >> > FactorKeepMargin(C, ["a", "b"]) >> > >> > end >> > >> > what I got on the REPL: >> > >> > julia> Pkg.test("BN") >> > >> > INFO: Testing BN >> > >> > Test Summary: | >> > >> > Define, permute factor, and call (var, card, val) | No tests >> > >> > Multiply and marginalize factor: Error During Test >> > >> > Got an exception of type ErrorException outside of a @test >> > >> > type DataType has no field FactorMargin >> > >> > in FactorDropMargin(::BN.Factor, ::Array{String,1}) at >> > /Users/Corvus/.julia/v0.5/BN/src/FactorOperations.jl:85 >> > >> > in macro expansion; at >> /Users/Corvus/.julia/v0.5/BN/test/runtests.jl:19 >> > [inlined] >> > >> > in macro expansion; at ./test.jl:672 [inlined] >> > >> > in anonymous at ./<missing>:? >> > >> > in include_from_node1(::String) at ./loading.jl:488 >> > >> > in include_from_node1(::String) at >> > >> /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:? >> > >> > in process_options(::Base.JLOptions) at ./client.jl:262 >> > >> > in _start() at ./client.jl:318 >> > >> > in _start() at >> > >> /Applications/Julia-0.5.app/Contents/Resources/julia/lib/julia/sys.dylib:? >> > >> > Test Summary: | Error Total >> > >> > Multiply and marginalize factor | 1 1 >> > >> > >> > On Wednesday, November 16, 2016 at 10:02:48 PM UTC-2, Yichao Yu wrote: >> >> >> >> On Wed, Nov 16, 2016 at 6:50 PM, Kevin Liu <kvt...@gmail.com> wrote: >> >> > From this issue https://github.com/JuliaPy/PyPlot.jl/issues/157 I >> >> > understand >> >> >> >> ^^ This is irrelevant unless you are using PyCall >> >> >> >> > >> >> > `Factor[:FactorMargin](A, Remove_var, Remain_var, Remove_dims, >> >> > Remain_dims)` >> >> > (line 85 of FactorOperations.jl) should pass, as it does on Atom, >> but >> >> > not on >> >> > the REPL, which throws >> >> > >> >> > Got an exception of type ErrorException outside of a @test >> >> > >> >> > type DataType has no field FactorMargin >> >> > >> >> > in FactorDropMargin(::BN.Factor, ::Array{String,1}) at >> >> > /Users/Corvus/.julia/v0.5/BN/src/FactorOperations.jl:85 >> >> >> >> Impossible to tell without code. >> >> >> >> > >> >> > >> >> > Help, please. >> >